KEGG V.vulnificus_YJ016: VV0898

Vibrio vulnificus YJ016: VV0898

Entry

VV0898 CDS V.vulnificus_YJ016

Gene name glyA

Definition serine hydroxymethyltransferase (EC:2.1.2.1)

Orthology K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]

Pathway vvy00260 Glycine, serine and threonine metabolism
vvy00460 Cyanoamino acid metabolism
vvy00670 One carbon pool by folate
vvy00680 Methane metabolism
vvy01100 Metabolic pathways

Class Metabolism; Energy Metabolism; Methane metabolism [PATH:vvy00680]
Metabolism; Amino Acid Metabolism; Glycine, serine and threonine
metabolism [PATH:vvy00260]
Metabolism; Metabolism of Other Amino Acids; Cyanoamino acid
metabolism [PATH:vvy00460]
Metabolism; Metabolism of Cofactors and Vitamins; One carbon pool by
folate [PATH:vvy00670]

SSDB

Motif Pfam: SHMT Aminotran_1_2 Beta_elim_lyase Aminotran_5 DegT_DnrJ_EryC1
OKR_DC_1 Cys_Met_Meta_PP
PROSITE: SHMT

Other DBs NCBI-GI: 37679082
NCBI-GeneID: 2623676
UniProt: Q7MN19

Position I:901221..902471

AA seq 416 aa
MLKRDMNIADYDAELFAAIQEETLRQEEHIELIASENYTSPRVMEAQGSQLTNKYAEGYP
GKRYYGGCEYVDKAEALAIDRACQLFGCEYANVQPHSGSQANSAVYMALLNPGDTVLGMS
LAHGGHLTHGSPVNFSGKHYNVIPYGIDEAGQINYDEMETLALEHKPKMIIGGFSAYSQI
VDWKRMREIADKVDAYLFVDMAHVAGLIAAGEYPTPVPHAHVVTTTTHKTLAGPRGGLIL
SNAGEDMYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEAMEPEFKAYQARVVKNAKAMVAQ
FQERGYKIVSNGTENHLFLVDLIDKDITGKDADAALGAANITVNKNSVPNDPRSPFVTSG
IRVGTPAITRRGFTEADAKELANWMCDVLDNIGNEAVIEATKQKVLEICKRLPVYA

NT seq 1251 nt +upstreamnt +downstreamnt
atgcttaagcgtgatatgaatatcgctgattacgatgcggagctattcgcagctatccag
gaagaaactcttcgccaggaagaacacatcgagctgatcgcttcagaaaactacacaagc
ccacgtgtaatggaagctcaaggctctcagctaaccaataagtacgctgaaggctaccca
ggcaagcgttactacggtggctgtgaatatgttgataaagcggaagctctcgcaattgat
cgcgcatgccagttgttcggttgtgaatatgcaaacgtacagcctcactcaggttctcaa
gcaaacagtgcagtgtatatggcgctgcttaacccaggcgacactgtattaggtatgagc
cttgcgcacggtggccacttgacgcacggctcaccagttaacttctctggtaagcactac
aacgttatcccttacggtatcgatgaagcgggtcaaattaactacgacgagatggaaacg
ctagcgcttgagcacaaacctaagatgatcatcggtggtttctcagcgtactctcaaatc
gttgattggaagcgcatgcgtgaaatcgcggacaaagttgacgcttacctattcgtcgat
atggcgcacgttgcgggtcttatcgcagcaggtgaatacccaacacctgtgccacacgca
cacgtagtaacgacaacgacgcacaaaacgctagcaggtccacgtggtggtcttatcctg
tctaacgctggcgaagacatgtacaagaaactgaactctgcggttttccctggtggccaa
ggcggtcctctaatgcacgttatcgcgggtaaagcagtagcgtttaaagaagcgatggaa
cctgagtttaaagcttaccaagcgcgcgtagtgaaaaacgcaaaagcgatggtggctcag
ttccaagagcgcggttacaagatcgtgtcaaacggtacagaaaaccacctgttccttgtt
gaccttatcgacaaagacattacgggtaaagatgcggatgcggcactaggcgcagcaaac
atcacggtaaacaagaactcagtgccaaacgaccctcgtagcccatttgtcacttcgggt
attcgtgttggtacgccagcgatcactcgccgtggctttactgaagcggacgcgaaagag
ctagcaaactggatgtgtgacgtactagacaacatcggcaatgaagcggttatcgaagcg
acgaaacagaaagtcctagaaatttgtaagcgtctacctgtttacgcataa

All links

Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (7)   
   PROSITE (1)   
All databases (23)

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