KEGG V.vulnificus_YJ016: VV1294

Vibrio vulnificus YJ016: VV1294

Entry

VV1294 CDS V.vulnificus_YJ016

Definition DNA polymerase III, alpha subunit

Orthology K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]

Pathway vvy00230 Purine metabolism
vvy00240 Pyrimidine metabolism
vvy01100 Metabolic pathways
vvy03030 DNA replication
vvy03430 Mismatch repair
vvy03440 Homologous recombination

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:vvy00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:vvy00240]
Genetic Information Processing; Replication and Repair; DNA
replication [PATH:vvy03030]
Genetic Information Processing; Replication and Repair; Mismatch
repair [PATH:vvy03430]
Genetic Information Processing; Replication and Repair; Homologous
recombination [PATH:vvy03440]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: DNA_pol3_alpha tRNA_anti PHP

Other DBs NCBI-GI: 37679476
NCBI-GeneID: 2624096
UniProt: Q7MLY4

Position I:complement(1313481..1316555)

AA seq 1024 aa
MFYAELFCQSNFSFLTGASHPEELIVQANFLGYHSLAITDECSLAGIVRAHSAIKQHQLS
VKQIVGSFFKLNTECQFVLLCPNREAYAELCRIITNARRRCEKGQYQLSQWDVMSLKHCL
LIWLPTGQTSDEQWATWLSRYQQSRLWLGLQRHLHHDDEHYLHHCQTLANQFDLPITACG
GVLMHRPERLPLQHTLTAIRHGCTVEQLGTQLLTNAEQSLRSEKKLRKLFKPQWLAESLY
IASLCSFDLDSLRYEYPSELIPDGYTPDSYLEHLVEQGKKLRFPEGVPDAIEQTIQKELA
LIKEQKYPFFFLTIHDIVMFAKQQGILYQGRGSAANSVVCYCLQITSVDPRQIAVLFERF
ISKERDEPPDIDVDFEHERREEVIQYIYQKYGRQRAALAATVISYRFKSAVRQVGKALGI
EETQLDFFLKNINRRDRQAGWQVQLVELGLRPDSLKGQHFIQLVEEIIGFPRHLSQHVGG
FVISSGPLYELVPVENAAMPERTIIQWDKDDLESLKLLKVDVLSLGMLTAIRKCFRSIEQ
HHQQRLSIADITRRQDDQAVYKMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIA
IVRPGPIQGDMVHPFLKRRDGEEPISYPSVHVQEVLERTLGVPIFQEQVIKLAMVAAGFS
GGEADQLRRAMAAWKKNGHVFKFKTKLINGMLERGYELDFAERIFEQICGFGEYGFPESH
SASFAVLAYCSAWLKHYYPAEFYTALLNSQPMGFYSPSQLVQDAKRHGIAVLPICVNFSN
PEHQLVRLTSGELAIRLGFNLIKGLSHEGITRLLTHRPAQGYQCISEVKQILRQAKDIQS
LASANAFYQLADNRYLARWQVMDNLDELPLFQTLPSISNNPLPKPSDYQNVLEDYAATGL
SLAEHPVAMLEKAGGLTRFTRANQLNQCSHRSLVTVIGLVTGKQSPGTAAGVTFFTLEDD
TGNINVVVWQATSRAQKQAYLTARLLMVKGILEREGDVIHVIAGRLVDLTEKLSGLSPKS
REFH

NT seq 3075 nt +upstreamnt +downstreamnt
atgttttacgctgaactcttttgccaaagcaacttctcttttctgacgggggcttctcac
cctgaagaactcatcgtgcaggcgaattttttaggctaccactcgctggcgatcacggat
gagtgctcactagctggcatcgtaagagcccacagcgccattaagcaacatcaactttcg
gtcaaacaaatcgtcggcagcttttttaaactcaatacagaatgtcagtttgtcttgctc
tgccccaaccgcgaagcctacgctgaattatgtcgaatcatcaccaacgctcgtcgacgt
tgtgaaaaaggccaataccaactgtcacaatgggatgtcatgtctctaaaacattgcttg
ctcatctggcttccgacagggcaaacgagtgatgaacaatgggcaacatggctttctcgt
tatcaacaatcacgtctttggcttggcttacaacgccatcttcaccatgatgatgaacat
taccttcaccactgccaaacattggcaaaccagtttgatttgcccatcacagcctgcggt
ggagtattaatgcacagacccgagcgattacctctacagcacacgctcaccgccattcgt
cacggttgtacggtagaacaactgggcacacagttattgaccaatgcagagcagtctctg
cgttcggagaagaaactccgcaagctgttcaaacctcagtggctagcagagagtctgtat
atcgccagcctatgcagttttgaccttgatagtttacgttatgaatacccaagcgagttg
attcctgatggctatactcccgactcttacctcgaacaccttgtcgaacaaggcaaaaaa
ttgcgctttccagaaggggttcccgacgctatcgagcaaacgattcaaaaagagcttgct
ctgattaaagagcaaaaatacccatttttcttcctcactatccatgacattgtcatgttt
gccaaacagcaaggcattctctaccaagggcgagggtctgcggccaattccgtcgtctgc
tattgcttacagattacctccgttgaccctagacagatcgcggtactattcgagcgtttt
atcagtaaagagcgtgacgagccaccggatattgatgttgatttcgagcacgaacgacgt
gaagaagtcattcaatatatctatcaaaagtacggtcgccaaagggctgcgctggcagcg
acggttatctcctatcgtttcaaaagcgccgttcgacaggtaggaaaagccttgggtatc
gaagaaacacagctcgattttttcttgaagaacatcaaccgtcgtgatcgccaggctggc
tggcaagtgcaactcgtcgaactgggtttaagacccgactcactcaaagggcaacacttt
attcagttagtcgaagaaatcattggttttcctcgtcatctttcacagcatgttggtggg
tttgttatctcttctgggccactatacgaactggttccagtcgagaatgccgccatgcct
gagcgcaccattattcaatgggataaagacgatcttgagagcctaaagttactgaaagtc
gatgttctatctcttggtatgcttaccgcaatccgtaagtgcttccgctcgattgagcaa
catcatcaacaacgactttctattgccgacattactcgccgccaagatgaccaagccgtc
tacaagatgattcaaaaagccgacactatcggcgtctttcaaattgaatctcgagcacaa
atgagtatgttgccacggcttaaacctgcgtgttactacgatcttgtgattcagattgcg
attgttcgcccaggcccaattcaaggtgatatggtccacccttttcttaaaagacgtgat
ggagaggaaccgattagttatccatcggtacacgtccaagaagtattggaacgaacactc
ggtgtgcctattttccaagaacaagtgattaaattggcgatggtggctgcgggattcagc
ggcggagaagccgatcaattacgccgcgctatggcggcatggaaaaaaaacggtcacgtc
ttcaagttcaaaacaaagttaatcaatggcatgttggaaagaggctatgagttagacttt
gcagaacgtatctttgagcaaatttgtggctttggtgaatatggttttccagaaagtcac
tccgcttccttcgcagttttagcctattgctctgcttggttaaaacactactaccccgct
gagttttatactgccctactcaacagccagcccatgggcttttatagcccatcccagctg
gtgcaagatgccaaaaggcatggtattgctgtgctacctatctgtgtcaatttctctaat
ccagaacatcaactggtgaggttaacatcaggcgagttagccattcgccttggtttcaat
ctgatcaaagggttaagccacgaaggcatcactcgcctactgactcatcgacccgcacaa
ggctaccaatgcataagcgaagtgaaacaaatcctgcgtcaggcaaaagatatccagagc
cttgcctctgccaatgctttttatcaattggcggacaatcgttatttggctcgctggcag
gtgatggacaaccttgatgaactgcctttgttccaaacgttacccagcataagcaacaac
cctttaccgaagccaagcgattatcaaaatgtattagaagactatgcggcaacagggctc
tctctggctgagcaccccgttgctatgttagaaaaagcgggcggcttaacacgctttacg
cgcgccaaccaattaaaccaatgctctcatcgctcattggtgacggtgatcggactggtg
accggaaaacaatctcccggaaccgcagctggtgtcacgtttttcactctcgaagacgac
actgggaatattaatgtggtggtctggcaggcaacctcaagagcacaaaagcaagcctac
ttaaccgcgaggctgttaatggtgaaaggcattttggagcgcgaaggagacgtcatacat
gtgatcgcagggaggttggttgatctgacggagaagctgtcgggtttaagtccaaaatct
cgtgagtttcattaa

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)

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