KEGG   Weissella cibaria: AO080_10830
Entry
AO080_10830       CDS       T04106                                 
Name
(GenBank) helicase RecD
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
wcb  Weissella cibaria
Pathway
wcb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:wcb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    AO080_10830
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:wcb03400]
    AO080_10830
Enzymes [BR:wcb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     AO080_10830
DNA repair and recombination proteins [BR:wcb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AO080_10830
SSDB
Motif
Pfam: AAA_30 AAA_19 Viral_helicase1 UvrD_C_2 AAA_22 SLFN-g3_helicase AAA_11 PhoH UvrD-helicase ResIII Helicase_RecD Herpes_Helicase NACHT AAA_16 DAP3 ATPase_2 DEAD PIF1 TrkA_C ADDB_N ATP_bind_1 BrxC_BrxD
Other DBs
NCBI-ProteinID: ALI33905
UniProt: A0A0N9YHT8
Position
complement(2273302..2275002)
AA seq 566 aa
MTRFSEDDTEMYFWRHKLPEQIYRKTSFAKLMASTPESEMKAFAREIFDKLPPEAQQRQE
YDQWLLALVEMLQQPHPVPDVMTALTTGMLADETLTAGQTAVWQNMQTTPSPIQIVTGRA
GSGKSYMMARLIRLAQQQDVNTLLITPTHAAATNARGLVERAIGDLLDEHEPDYLLKPVD
HVTIATATSFTYRNHDAMTEIARTGHFFEDAEKASRYPTYGLMIVDEAFAANVRALIDTI
LYGLATGAQILLVGDPHQLPSVENDPVPFLNAMVLANLANQTPTLQQIKRANSPIIATVA
NAVLDGDVAQIEAPTELMPAEVLPDVFLARPYTFVPMSETALLFVVETIKRALIAEPDKE
TVALVPTNELRKLINAAVQNALLDTAVLRTEVPLWVRDDLTLYPGDRVQVMQTVYVTNQA
SGVHEKVRMRGGDRITVVDVMPDYDMVLVQTVDTPDPILVDLNESSQTGFNPFSYGPKLV
SVRENLDLGYATTIHKIQGFTLDNVLVVLPMISKFITTNLMYSAVTRAASHLAIVAFPAQ
LKQTLANKVTHDRAAMRRVQGLIASQ
NT seq 1701 nt   +upstreamnt  +downstreamnt
atgacacgattttcagaggacgatacagaaatgtatttctggcgccataaattgccagaa
caaatttaccgtaaaacaagttttgcaaaactcatggcgtcaaccccagaatcagaaatg
aaggcgtttgcccgtgaaatcttcgataaactcccgccagaagcgcaacaacggcaagaa
tatgatcaatggctgttagctttggttgagatgttgcagcaaccacatccagtgcctgat
gttatgaccgcactgacgaccgggatgctggcggatgagacgttgacggctgggcaaact
gctgtttggcagaatatgcaaacgacgccatcgccaattcaaattgtgacagggcgggct
ggttctggtaagtcatatatgatggcgcgcctaattcgattggcccaacaacaagatgtg
aacacgctgttgataacaccaacccacgctgctgcgacgaatgcccgtggtcttgtcgag
cgtgccattggtgatttacttgacgaacatgaaccggattacttgctgaagccagttgac
cacgtcaccattgcgacggcgactagtttcacataccgcaatcacgatgcgatgacagaa
attgcgcggacagggcatttttttgaagatgctgagaaggctagtcggtatccgacgtat
ggcctcatgattgttgatgaggcgttcgctgcaaatgtgcgggcgttaatcgacacgatt
ctatacggcttagcaactggggcccaaattttgctcgttggtgatccacaccagttaccg
tcagtcgagaacgacccggtgccatttttgaacgcgatggttctggcgaacttagcaaat
cagacgccgaccttacaacaaattaagcgggctaattcgccaattattgcgacggttgcg
aatgctgtgttagatggcgatgtggctcagattgaagcgccaactgaattaatgcccgcc
gaagtgttgccggatgttttcttggcgcgaccttatacctttgtgccaatgtcggaaacg
gcactgttgtttgtggttgaaacgatcaaacgggccttaatcgctgagccggataaggaa
accgtggcacttgtaccaactaacgaacttcgcaagctaattaatgcagctgtgcagaat
gcgttactggatacggctgtcttgcggactgaagtaccactttgggtacgtgatgattta
acgttatatccaggtgaccgggtccaagtgatgcagacagtttacgtgacgaaccaagcg
agcggtgtgcacgagaaggtccggatgcgtggtggtgaccgtatcacagtggttgatgtg
atgccggattacgacatggtgttggtgcaaactgttgatacgccggatccgattttagtt
gatttgaacgaaagtagtcagaccggctttaatccattttcgtatggtccgaagttggtg
agtgtccgtgagaatttggacttagggtacgcgaccacgattcataaaatccaaggattt
acgttggataatgtgttggttgtcttgccgatgatttcaaagttcattacgaccaattta
atgtattcggcagtaacacgggcggcgtcgcatttagcgatcgtcgcgtttccggcgcaa
ttaaagcaaacattagccaataaagtgacacatgatcgcgctgctatgcgacgggtgcaa
ggattgattgcgtcacaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (22)   
   Pfam (22)   
All databases (32)   

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