KEGG   Wallemia ichthyophaga: J056_000194
Entry
J056_000194       CDS       T03457                                 
Name
(RefSeq) Exosome complex component rrp4
  KO
K03679  exosome complex component RRP4
Organism
wic  Wallemia ichthyophaga
Pathway
wic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:wic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J056_000194
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:wic03019]
    J056_000194
Messenger RNA biogenesis [BR:wic03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     J056_000194
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     J056_000194
SSDB
Motif
Pfam: RRP4_S1 ECR1_N KH_6 RRP40_S1 EXOSC1
Other DBs
NCBI-GeneID: 20373146
NCBI-ProteinID: XP_009265867
UniProt: R9AXN0
Position
Unknown
AA seq 327 aa
MPFNLAHNTHIETLQPADREEVNDADADIEMDDDDSFPRSKLTSPGDVIASSSAYMHGHG
TYVHNDNIVSNMFGTVERVNKLVSVRPLKHKYIPQVGDLVIGRIVEVQAKRWKVDIHSSS
DAVLMLSSINLPGGVQRRKLESDELQMRNFFTEGDLCVAEVQSFFHDGSVSLHTRSLKYG
KLRNGTLATVPPNLMRRLKSHFYTLPVNVDLIIGLNGSIWVSMHDDVSQDLNLNDDNQGF
DSEGVYNDTNDSIDSQTRESINRTAIVIDILASHRVPLTDTLIATAYDVALDLEQDNGIR
FLSSNEDVQDELVHCALQVEESAMDNA
NT seq 984 nt   +upstreamnt  +downstreamnt
atgcctttcaatttggcgcacaacacgcacatagagacactgcagccagcggacagagaa
gaagtcaatgacgcagacgctgatatagaaatggacgacgatgattctttcccgcgttcc
aaactcacttctccgggcgatgtgattgcgtcgtcgtcggcatacatgcacggacacggc
acatatgttcacaacgataacatcgtttccaacatgttcggcacagtagagcgtgtcaac
aaactcgtttctgtacgtccactaaaacacaagtatattcctcaagtcggtgatctcgtt
attggccgtatcgttgaagttcaagctaagcgttggaaagttgacatccactcctcctca
gatgctgtccttatgctctcctctatcaacttgcctggtggtgtacagagacgtaaattg
gaatcggatgagttgcaaatgcgcaatttcttcactgagggtgacttgtgcgtcgctgaa
gttcagtccttctttcatgatggaagcgtttcgttgcacacgcgtagtttgaaatacggt
aaactgcgtaatggaactctagctactgtcccgccaaatctcatgagacggctcaaatct
catttctacacactacctgtcaatgttgaccttattattggcttgaatggctctatctgg
gtgagcatgcacgacgacgtcagtcaggacctcaacctcaacgatgataatcagggtttc
gatagtgagggcgtgtataatgacaccaacgactctatcgactctcagactcgcgaatct
atcaatcgcactgctatcgttatagacatactcgctagccatagagttccccttactgac
acactcattgctactgcttatgatgtggctctcgatctagagcaagataatggtattagg
tttctctccagtaatgaggatgttcaggatgaattggtacactgcgcactccaagtcgag
gagagtgctatggataatgcataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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