KEGG   Wallemia ichthyophaga: J056_003411
Entry
J056_003411       CDS       T03457                                 
Name
(RefSeq) ATP-dependent DNA helicase srs2
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
wic  Wallemia ichthyophaga
Pathway
wic03420  Nucleotide excision repair
wic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:wic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    J056_003411
   03430 Mismatch repair
    J056_003411
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:wic03400]
    J056_003411
Enzymes [BR:wic01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     J056_003411
DNA repair and recombination proteins [BR:wic03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     J056_003411
   MMR (mismatch excision repair)
    Other MMR factors
     J056_003411
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 AAA_30 AAA_11 AAA_12 Terminase_6N SGTA_dimer
Other DBs
NCBI-GeneID: 20376363
NCBI-ProteinID: XP_009266909
UniProt: R9AKV6
Position
Unknown
AA seq 927 aa
MGGGDTKDVKDTKPNYLNGLNAAQCQAVLHEPYSSLQILAGPGSGKTRVLTTRIAHMILE
HNILPSNIVAVTFTNKAAKEMKERLKKLIDPKKVEGLIMGTFHSVCIRYIKIYGKFLDPP
MTKDWSIIDASDSKDVVAQVCKEDSGLKGLADYSRNKISWYKAKRIGPDDLEDIAEATTD
KFEKKQLKQVAYVYEEYQKKLDKFNCLDFDDLLIEGCRVFEQVPNAKSNIRVMLVDEFQD
TNTVQYDLMRLMSRNDYVSIVGDPDQSIYGWRAAEIGNLQKMKKDFQNTSEIYLEQTYRS
SGAIVKAAMSVMSQDKTRPEKELKTDHPEGSPVTLKEFFDGDSEAYWIAKEIKRQIAYSG
NKLRYEDFVILLRFNALSRTIESQLNKMRIPVRVLAGTKFFDRSEIKDIMSYLTLLINPS
HTPALKRSINVPKRGMGPKSVEDIVDISSKAILPPFTMLLDGLINEEKVKGWKASWKKLD
AFVYPLDESRQALRNGKPLKSIVEKLIADIEYESYLKVSCSSEREVNSRVENLKELLSFA
ATIDDDFNQGTLFKPDEEFDSVKDQNFARLGKFLEVSSLDVSFNTEADVDEALGKVTIST
IHSAKGLEWPVVFMPAVESGVIPFFKADTEDQVREERRLLYVGMTRAQAVLNISHARSRL
VAGSMKDRCLSDFLKFARNLECYQDDIMLIDDKLRSQLLSILNLDYPNKEDLKAAINEFE
EAFKVDKLREQQMKQNERLRNIDGEGNDYNGYHEYDPDGYDRYDYRSRYGRGKGYNNSYQ
RFRAPKSNNLVQQLSHETLNNPFKTGSGGSIASGGAGGSNRTATTRRKVHSDIKPFNPPR
PAVPPAPASKEVKAEVEASGNSMKRYKTDPDVEILDKAASHFRSTNLQSFQQGADKWKDS
LKGLLPDSGIDGSGDSGDAKPPKKPRT
NT seq 2784 nt   +upstreamnt  +downstreamnt
atgggtggcggcgatacaaaggatgttaaggacacaaagccaaactacttgaatggatta
aatgcagcacaatgccaagccgtgcttcacgagccgtattcatcactccagatccttgca
ggacccggttcaggtaaaactcgcgtgctgacgacgaggatcgcgcacatgatcctcgag
cacaatatccttcctagcaacatcgttgcagtcactttcacaaacaaagcggcaaaggaa
atgaaagagcgcctgaagaagctcatcgatccaaagaaagtagaaggcctgataatggga
acatttcactctgtctgcatcaggtatataaagatctatggcaagtttctcgaccctcca
atgaccaaagattggtccatcatcgatgcaagtgattccaaggatgtcgttgctcaagtt
tgtaaagaggatagtgggctcaaaggtctcgctgactactcccgcaacaaaatatcttgg
tataaagctaagcgtatcggtccagatgacctagaggatatagccgaagcaacaactgat
aagtttgagaaaaagcagctcaaacaagttgcttatgtttacgaggaatatcagaagaag
ctcgataaattcaattgtctcgactttgatgatctcttgattgaaggttgtcgcgttttc
gagcaagtccctaacgccaaaagcaacatacgtgtcatgctcgttgatgaatttcaagac
accaacacagtacaatacgatttgatgaggttgatgtctcgcaatgactatgtcagtatc
gttggtgatccagatcagagtatctatgggtggagagctgcagagattggcaatttgcag
aaaatgaagaaagatttccaaaacacatccgaaatttacttggaacagacttacagatct
tctggtgctattgtcaaggctgcaatgtctgtaatgtctcaagataagacaagaccagag
aaggaacttaaaactgatcatccagaaggatccccggtgacgctcaaggagttctttgat
ggagacagtgaagcgtactggattgccaaagagatcaagagacaaattgcatactcagga
aacaagctgagatatgaagacttcgtaatcctgctacgcttcaatgccttatctcgtacg
atagaatcacaactaaacaaaatgcgcatcccggtcagagttcttgcaggtacaaaattc
tttgaccgttctgaaatcaaagacataatgtcctatctgacgttgctgataaacccaagt
cataccccagctctaaaaagatcgatcaacgtaccaaagcgtggaatgggtccaaagagt
gttgaagacatagtagatatatcatcaaaggcaatattgccgccattcacaatgcttctc
gacggtttaataaatgaggaaaaagtcaaaggctggaaggcatcttggaaaaagcttgat
gcgttcgtttatccactagatgaaagccgtcaagcactacgcaatggtaaaccactcaaa
agtatagtagagaagttgatagctgatattgagtacgaaagttacttgaaggtgtcctgt
tcgagtgagagagaagtaaactcgagagtggagaacctcaaggaacttttgtcgttcgct
gccaccattgatgatgacttcaatcaaggcacactattcaaaccagatgaagagtttgat
tcagtcaaggatcaaaactttgctagactgggtaaatttttggaggtctcttctttagat
gtcagtttcaacactgaggcggatgttgatgaggctttgggaaaagtgacaatatcaaca
atccacagcgcaaaaggtttggagtggcctgtggtatttatgccagctgtagaatcaggc
gtaatacccttctttaaagcagacacggaagatcaagttagagaagagagacgactgctc
tatgttggaatgactcgtgcacaggccgtgctgaacatttcgcacgctcgttctagattg
gtagcaggatcaatgaaagatagatgcctctcagatttccttaagtttgccagaaatctt
gaatgctatcaagatgatattatgctaattgatgataagctgcgcagtcaattgctctcc
atactcaacctcgattatccaaacaaggaggatctcaaagctgctataaatgaatttgag
gaagcattcaaagtcgacaaattgagggagcagcagatgaagcagaatgaaaggctgagg
aatattgatggtgaaggaaatgactacaacggctatcatgaatatgatcctgatggctac
gacagatatgattatagatcgaggtatggaagaggaaagggatacaacaattcttaccag
agattcagggcgcccaagtcgaataatttggtccaacaactttcccacgagacattaaat
aatccattcaaaactggtagtggtggtagtattgctagtggtggtgctggcggcagcaat
agaactgcaacaacaagaagaaaggtgcactcagacattaagccattcaatccaccacgt
ccagcagtaccaccagcaccagccagtaaagaagtgaaagctgaggtggaagccagtggc
aacagcatgaagaggtacaagacagatccagatgttgaaattctcgacaaggccgctagt
cactttagatctaccaacttgcagtcttttcaacaaggcgccgacaagtggaaggacagc
ctgaagggccttttacctgatagtggtattgatggcagtggtgattctggtgatgcgaag
cctccgaaaaagccacgtacttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (44)   

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