KEGG   Wallemia ichthyophaga: J056_004308
Entry
J056_004308       CDS       T03457                                 
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit pan3
  KO
K12572  PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
wic  Wallemia ichthyophaga
Pathway
wic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:wic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J056_004308
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:wic03019]
    J056_004308
Messenger RNA biogenesis [BR:wic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     J056_004308
  mRNA degradation factors
   3'-5' decay
    Pan complex
     J056_004308
SSDB
Motif
Pfam: Pan3_PK Pkinase PK_Tyr_Ser-Thr
Other DBs
NCBI-GeneID: 20377260
NCBI-ProteinID: XP_009267784
UniProt: R9AH61
Position
Unknown
AA seq 557 aa
MSKAVPIRPPDAAPSPSTPTTPKSQTAVPIKASTPAFVPSAAALAATHTTHTTQSPTKTA
SPSGFAATAPVFIPKTSSPYDEQGDEEATAPTGAQWEWSGMDSELSGIYDNSTSYPRHPL
QYHLYVPPPPYKLIHNVNLSQFFLHQDTHKAITEAHESQLRAPPPGLRLPERLHVYRDLY
PLDEGIGPGVGLASYPTYVYRATSERDGARYALRRVEGFRLTSQEPLSVVDRWRRLRHPH
VVPLIEAFSTRSFHDSSLILVHAYYANAKTLGSIHQANALNPHPPPLVEHTLWVYLVQIV
QAVMHIHTQGLAVRCINPSRVLVTGKNRLRLNCVGAMDVLLYDDFANVHTHQQEDLSAVG
TLLLTLALGNSSTVTANPTKAMEFFSRQYGPDLQRIVLWLLGNRSPLKTAQELWGMVLKI
KPAVVAELLDASVSAGDTLTDELAKEVENGRLVRLLCKFGFINERAEFDLDSRWSETGDR
YIIKLFRDYVFHQVDEHGKPVLDMSHVLVCLNKLDAGVDESLMLISRDEQSCLVVSYKEV
KQCIESAFGDLKRETGV
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgtcgaaagccgtgcccatacgcccgccagacgctgcgccgtcaccaagcacacccaca
acccccaaatcccaaaccgctgtccccataaaagcatcgacgccagcgtttgtaccctca
gccgcggcactcgcagcgacgcacacgacgcacacgacgcaatcccccaccaagacagcc
agtccgtcggggtttgcggctacagcgccagtatttattcccaagacgagttcgccgtac
gacgagcaaggcgatgaggaagcgacagcgccaacaggagcgcaatgggaatggagtggc
atggacagcgagctgagcgggatatacgacaattctaccagctacccacgccacccactc
cagtaccatctctacgtccctccaccgccatacaagctaatccacaatgtaaatctctcc
caattcttcctccatcaggacacacacaaggctataactgaagcgcacgagtcacagcta
cgtgcacctccacctgggctgcgtctgcccgagcgactgcacgtctaccgcgacctctat
ccgctagacgagggtatcgggccaggtgtaggattggcgagttatccgacgtacgtctac
cgcgcaacatcggagagagacggtgctcgttacgcgctgcgtcgcgtcgaaggctttcgc
ctcacatcgcaagagcctttgagtgtagtggacagatggcgtcgattgcgtcatccccat
gtcgttcctctcatagaggcattttcgacgcgctctttccacgactcctccctcattctc
gtccacgcttactacgctaatgccaagacacttggcagcatacaccaggccaacgcactc
aacccgcacccgccaccactcgtggaacacacgctgtgggtgtatctcgtacagatcgtg
caggcagtcatgcacatacatacacaaggactagctgtgcgctgtatcaacccctcacgc
gttctcgtcacgggtaagaatcgtctgcggttgaattgtgttggtgcgatggacgtcctg
ctgtacgatgatttcgcaaatgttcatactcaccagcaggaggatctttccgccgttggt
accctcctcctcactctcgctctgggcaattcgagcaccgtcaccgctaaccctaccaag
gccatggagttctttagcagacagtacgggcctgatttgcagcgaatcgtgctgtggctg
ctgggtaatagatcaccactcaaaactgcccaggaactttggggaatggtgctcaaaatt
aaacccgctgttgtcgctgagttgctcgatgctagcgttagcgcgggcgataccctcaca
gatgaactcgccaaggaggtggagaatggcagattagttagattgttgtgcaaattcggt
tttatcaacgagagagcagaattcgatctcgactctcgatggtcagagactggcgacagg
tatatcatcaaactctttcgagattacgtctttcaccaggtcgacgaacatgggaaacca
gtcctcgacatgtcgcatgtcctcgtctgtctcaataaattagatgctggcgttgatgaa
agtctgatgctcatctcgcgcgacgagcagagttgtctcgttgtgtcttacaaagaggtt
aaacagtgtatagaatctgcatttggggatcttaagagggaaaccggtgtgtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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