KEGG   Winogradskyella sp. J14-2: BWZ20_03670
Entry
BWZ20_03670       CDS       T04714                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
wij  Winogradskyella sp. J14-2
Pathway
wij03030  DNA replication
wij03410  Base excision repair
wij03420  Nucleotide excision repair
wij03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:wij00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BWZ20_03670
   03410 Base excision repair
    BWZ20_03670
   03420 Nucleotide excision repair
    BWZ20_03670
   03430 Mismatch repair
    BWZ20_03670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:wij03032]
    BWZ20_03670
   03400 DNA repair and recombination proteins [BR:wij03400]
    BWZ20_03670
Enzymes [BR:wij01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BWZ20_03670
DNA replication proteins [BR:wij03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BWZ20_03670
DNA repair and recombination proteins [BR:wij03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BWZ20_03670
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BWZ20_03670
   MMR (mismatch excision repair)
    DNA ligase
     BWZ20_03670
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BWZ20_03670
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 RNA_ligase Auto_anti-p27
Other DBs
NCBI-ProteinID: APY07451
UniProt: A0A1P8RUB6
Position
complement(778230..780224)
AA seq 664 aa
MNTQQKIQSLRDELRQHNYNYYILDNPTISDYEFDMKLKELQALEEAHPEFYDENSPTKR
VGGTVTKNFNTVVHDFRMYSLDNSYSKEDLMDWEKRIKKMVDGDVQYTCELKYDGASMNL
TYENGKLVRAVTRGDGVQGDEVTANVKTINTVPLQLKGDYPERFDIRGEIILPIEGFLKM
NEERIANDEEPYRNPRNTASGSLKLQDSAEVAKRPLECFLYSIKGNNLNISTQFEGLEKA
REWGFKVPQEAKLVSSIDEVLEYVNYWDEHRHNLPYEIDGVVVKVNSLYQQDELGYTAKA
PRWAMAYKFKAEQVSTRLNEITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIEK
LDIRERDEVFVEKGGEIIPKIIAVDLAKRPEDSKPTIYVTHCPECQTELIRPEGEAKHYC
PNYNGCPPQIVGRIQHYISRKAMDIEGLGGETVALLVKEGLISNYADLYELTVEQVIPLE
RMAAKSAENLVKGIEASKQIPFERVLFALGIRYVGETVAKKLAKHYKSIDALMFASVLDL
VTVDEIGERIAESVVEFFSSEENKIIVERLKDYGVQLEISAEKLANQTEKLKGQTFVVSG
VFESVSRNELKKLIEDNGGKVSSSISSKTSYLVAGDKMGPSKRLKAESLGVTMLSEQEFL
SILK
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgaacacacaacaaaaaatacaatccttaagagacgaattacgtcaacacaattataat
tactacatactcgataatcctactattagcgattatgagtttgatatgaaattgaaagaa
cttcaagctttagaagaagcacatccagaattttatgatgaaaattcgccgacaaaacgt
gtaggtggtactgttaccaagaattttaatacggttgtgcacgactttagaatgtattct
ttagacaattcttattctaaagaagatttaatggattgggaaaagcgcatcaaaaaaatg
gtagatggagatgtgcaatacacgtgtgagttaaagtacgatggtgcatccatgaactta
acctacgaaaacggaaaactcgtgagagcagttaccagaggtgatggagtgcaaggtgat
gaagttacggctaacgtaaaaactattaatacggtaccactgcagttaaaaggagattat
cctgagcgttttgatataagaggtgaaatcattctgcctatcgaaggttttttaaaaatg
aacgaagagcgtatagctaatgatgaagaaccgtatcgaaatccaagaaatacagcatca
ggaagtttaaagttacaagatagtgctgaggtggcaaagcgacctttagaatgttttctc
tatagtataaaaggtaataatctaaatatttctacacagtttgagggattagaaaaagcc
agagaatggggttttaaggtaccgcaagaggcgaaattggtcagttccattgatgaggtt
ttagagtatgtaaattattgggatgagcacagacataatctaccatacgaaattgatgga
gtagtggtaaaggtaaatagtttatatcagcaagacgaattaggttatacagccaaagca
ccacgctgggcaatggcttataaatttaaagccgaacaagtttcaacgagattaaatgaa
attacctatcaagttggtcgtacaggagctataacacctgtggctaatttagagccagta
caattagctgggacaatagtaaaacgtgcatcgttgcataatgccgatcagattgaaaag
ttagacattagagaaagagacgaggtgtttgtagaaaaaggaggtgaaattattccaaag
attattgctgtagaccttgcaaaacgtcctgaagattctaaaccaacaatctacgttaca
cattgtccggaatgtcaaaccgaattgataagaccagaaggagaagcgaaacattattgt
cctaattataatggttgtccaccacagattgtaggtcgtattcaacattatatttcaaga
aaggcaatggatattgagggacttggtggagaaaccgttgcacttttggtcaaagaaggc
ttaatttcaaactatgctgatttatatgaattaacagtagagcaagttataccgttagaa
cggatggcagcgaaaagtgctgagaatttggtaaaagggattgaggcctctaaacaaatt
ccgtttgagcgtgttttgtttgctttaggtattaggtatgttggagaaactgttgctaaa
aaattagcaaagcattataaatctatagatgctttaatgtttgcttcagtcttggatttg
gtaactgtagatgaaataggcgagcgtatcgcagaaagtgttgtagagttcttttcttca
gaagaaaataaaataattgtagagcgactaaaagactacggcgtacaattagaaatctct
gcagagaaattagctaaccaaactgaaaagttaaaaggacaaacatttgtagtttcaggt
gtatttgaatctgtttctagaaatgagcttaaaaaactcattgaagataatggtggaaaa
gtatcgtcctcaatatcgtcaaaaacaagttatctagttgcaggtgataaaatgggtccg
agtaaacgcttaaaagcagaaagtttgggtgttaccatgctctcagaacaagagtttttg
tctattttgaaataa

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