KEGG   Winogradskyella sp. PG-2: WPG_2674
Entry
WPG_2674          CDS       T03603                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
win  Winogradskyella sp. PG-2
Pathway
win03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:win00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    WPG_2674
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:win03019]
    WPG_2674
   03400 DNA repair and recombination proteins [BR:win03400]
    WPG_2674
Enzymes [BR:win01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     WPG_2674
Messenger RNA biogenesis [BR:win03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     WPG_2674
DNA repair and recombination proteins [BR:win03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      WPG_2674
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind AAA_22 Fer2_3 HTH_11
Other DBs
NCBI-ProteinID: BAO76904
UniProt: A0A024FJ37
Position
complement(2911601..2913496)
AA seq 631 aa
MHPLEVLERYWNHTSFRPLQEDIINSILNKQDTFALLPTGGGKSICFQIPALINDGICIV
ISPLIALMKDQVYTLKVKGIKSIALTSGMSYKDLDTQLDNCIYGNYKFLYLSPERLQQPL
VKERIQQMRVNLIVVDEAHCISQWGNDFRPAYKHINALRQIHPHVNCIALTATAKHKVVD
DIIENLDFANPKIFKASFSRSNIAYSVIHTDDKLFQLEHFLKKHQGPSIIYVRNRRATSD
IHNFLSAKGFSSTFYHGGITNKEKQQRLYEWTNNQKQIIVATTAFGMGIDKANVKTVIHF
NLPESLESYYQEAGRAGRDGELAHAIILKQHIDEDHLRNQFLSTLPAVSFVKTVFNKLCN
YFQIPYGEGENSTHQFDFKSFCNTYKLKTSITYNALLLLDRNAIITLTQHFNFRTKIQFT
ITNTALFAYLETHLDLNTLVKVLLRTYGGIFDYETKVNLSLIINKTNLSEKLIIEQLQRL
EKDEVISLKMANTDSEITFLKPREDDITLNPIAKTIEQQHQLKHEQIETVLSYIQNNDVC
KSQQLLAYFGEKTKTKCGKCSVCIEENSSNKKSIKINISNLILKSLESEDLSSRQLLQYL
NCSEQVLLKSLSELIETKKIKITQANTYSIL
NT seq 1896 nt   +upstreamnt  +downstreamnt
atgcatcctttagaagtattagaacgatattggaatcacacgtcatttagacctcttcaa
gaagatatcataaattcgatattaaacaagcaagatacttttgcactgctgccgactgga
ggtggaaaatcaatatgctttcaaatccctgcattaattaatgatggtatttgtattgtg
atatctcctttgattgctttaatgaaagaccaggtatataccttaaaagtaaaaggtata
aaatcaattgctttgacctcaggtatgtcttacaaagatttagatacacaattggacaat
tgtatctatggcaattataagtttttgtacctctcacctgagcgtttacaacagccatta
gtaaaggaaaggattcagcagatgcgagtgaatttaattgttgtagacgaagcgcactgt
atcagtcaatggggaaatgattttagaccagcctataaacacataaatgcattaagacaa
atacatccacatgtaaattgcattgccttaactgcaacagcaaaacataaggtggttgat
gatattattgaaaacttagattttgcaaacccaaaaatatttaaagcttccttttcaaga
tctaatattgcatatagcgttatacatactgatgacaagctatttcagttagaacatttt
ttaaagaagcatcaaggtccttccatcatatatgtaagaaacagaagagcaacttctgat
attcataactttttatcagctaaaggattttcttctacattttatcatggcggcattact
aataaagaaaaacagcaacgcttatatgaatggactaataatcaaaaacagattattgtt
gctactactgcctttggaatgggaattgataaagcaaatgtaaaaacagtaattcatttc
aatttacctgaaagtttagaaagttattatcaagaagctggtagagctggtagagatggt
gaattagcgcatgcaattattctaaaacaacatattgatgaggatcatcttcgtaatcaa
tttttaagcacgttaccagctgttagttttgttaaaactgtatttaataagttgtgtaat
tattttcaaatcccatatggtgaaggagaaaatagcacgcatcaattcgattttaaatct
ttctgtaatacctataaattaaaaacaagtattacatacaacgcgctgttgttattagac
agaaacgctattattactcttactcaacattttaatttcagaactaaaattcaatttaca
attactaatacagcgttgtttgcatatctagaaactcatttagatttaaacactttggtc
aaagtattgttaagaacttatggcggcatttttgattatgaaacaaaggtcaatctcagt
cttatcattaacaaaactaatttatctgagaagttaatcatagagcaattacaacgctta
gaaaaagatgaagttatcagtcttaaaatggcaaatacagattctgagattacattttta
aaaccgcgtgaagacgacattactttaaacccaatcgcaaaaacaatagagcaacaacat
caattaaaacatgaacaaatagaaacagttctaagttatattcagaataacgatgtctgt
aaaagccaacaactattagcctattttggcgaaaagacaaaaactaagtgtggaaaatgt
tctgtatgtattgaagaaaattctagtaataaaaaatcgatcaaaatcaatatttccaat
ctaatcttaaaaagtttagaatcagaagatttatcttcgcggcaattattacaatatcta
aattgttctgaacaagttttgctaaaaagtctatcagaattaattgaaacaaaaaaaatt
aaaataactcaagctaacacctactctattctatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (48)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (65)   

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