KEGG   Xanthomonas albilineans: XALC_2052
Entry
XALC_2052         CDS       T01160                                 
Symbol
deaD
Name
(GenBank) probable atp-dependent rna helicase (cold-shock dead box protein)
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
xal  Xanthomonas albilineans
Pathway
xal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XALC_2052 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xal03019]
    XALC_2052 (deaD)
   03009 Ribosome biogenesis [BR:xal03009]
    XALC_2052 (deaD)
Enzymes [BR:xal01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     XALC_2052 (deaD)
Messenger RNA biogenesis [BR:xal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     XALC_2052 (deaD)
Ribosome biogenesis [BR:xal03009]
 Prokaryotic type
  rRNA helicases
   XALC_2052 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 adh_short AAA_19 Flavi_DEAD
Other DBs
NCBI-ProteinID: CBA16536
UniProt: D2U8X0
Position
complement(2417635..2419608)
AA seq 657 aa
MSQDIPAPLLFADLGLCSAVMKAVAEIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKT
AAFALPILSRLDFAQRKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PQSRQVALFSATMPAAIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALT
RILEVEPFDAMIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGML
RAIERATRQPIEEMQLPSVDAVNDQRVSRFMERISETIAAGGIDSYRELLQRFEAEKNIP
MVEVAAALARLLQGDTPLLLAPDRPRAAPQGERFERPGGERRERGERPERAKFEQKFERE
ARPSRRDEGERAPRPAPAQGGDFDYHRDVGSFEAPRRDKAPKAPRGAPDVGMETYRIEVG
HQHGVKPANIVGAIANEAGLESKYIGRIDIHDDHSILDLPVEMPRELLAHLKKVWVSGQQ
LQMRKLDDATSGGAPFKPKFARGGKPGGKPNAAAARPPGRFGDRPGERPPRKGPPKR
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgtcccaagatatccccgcgccgctgctgttcgcagatctcggcctctgttctgctgtg
atgaaggcggtcgccgagatcggttacgagtcgccctcgccgatccaggcggccaccatc
ccggccctgctgaccgggcgcgacctgctcggccaggcccagacgggcaccggcaaaacc
gctgcattcgcgctgccgatcctgtcgcggctggacttcgcccagcgcaagccgcaggca
ctggtgctggcgcccacgcgggaactggcaatccaggtcgccgaggcgtttcaccgctac
gctgctgccattcccggcttccaggtattgccggtgtacggcggccagccctatgtgcag
cagttgtcggcgctcaagcgtggcgtgcatgtggtggtggggaccccgggacgggtcatc
gaccatctcgaccgcggcaccctggacctgtccgagttgaagacgctggtcctcgacgag
gctgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgttgaagaagctg
ccgcaatcgcgtcaggtagcgctgttctcggcgaccatgccggcggcgatcaagcggatc
gcgcagacgtatctcaacgatccggccgaagtcatcattgcctccaagaccaccacctct
gcgaacattcgccagcgctactgggcggtgagcgggttgcacaagctcgatgcgctgacc
cggattctggaggtggagccgttcgacgcgatgatcatcttcgcgcgcaccaaggccggt
actgacgaactggcgcaaaagctgcaggcacgcggtctggcggcggcggcgatcaacggc
gacatccagcaggcgcagcgcgagcgggtgatccagcaactcaaggatggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgtggcctggatgtggagcgcatcagccatgtg
ttgaactacgatatcccttacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgcgccgggcgcagcggcgaggcgatcctgttcgtcagcccgcgcgagcgcggcatgttg
cgtgcgatcgagcgcgccacccgccagccgatcgaagagatgcaattgccgagcgtggac
gcggtcaacgatcagcgtgtgagccgcttcatggagcggatcagcgagaccatcgcggcc
ggtggcatcgacagctaccgcgaattgctgcagcgcttcgaggccgagaagaacatcccg
atggtggaggtggccgccgcgctggcacgcctgctgcagggcgacacgccgctgttgctg
gccccggaccgtccgcgcgcggcgccgcagggcgagcgtttcgaacgacctggcggcgag
cgtcgcgagcgcggtgagcgtccggaacgtgcaaagttcgagcagaaattcgaacgcgag
gcccggccatcccgtcgcgacgagggcgaacgtgcgccgcgtcctgccccggcccagggc
ggcgatttcgattaccaccgcgatgtcggcagtttcgaggcgccgcgccgcgacaaagcg
ccgaaagcgccgcgtggcgcaccggatgtgggtatggagacctaccgcatcgaagtcggt
caccagcatggggtgaagccagccaacatcgtcggtgccatcgccaacgaggccggactg
gaaagcaagtacatcggtcgcatcgatatccacgacgatcactcgatcctggacctgccg
gtggagatgccgcgcgagctgttggcgcacctgaagaaggtgtgggtctctggccagcaa
ctgcagatgcgcaagctcgacgacgctacgtccggcggtgcgccgttcaagccgaagttc
gcgcgtggcggcaagcccggtggcaagcccaacgccgccgccgcgcgtccaccggggcgc
ttcggcgaccgtcctggcgagcgtccgccgcgcaaggggccgcccaagcgttga

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