KEGG T02500: XAC29

Xanthomonas axonopodis Xac29-1: XAC29_19990

Entry

XAC29_19990       CDS       T02500

Name

(GenBank) hypothetical protein

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

xao Xanthomonas axonopodis Xac29-1

Brite

KEGG Orthology (KO) [BR:xao00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:xao03016]
    XAC29_19990
Enzymes [BR:xao01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     XAC29_19990
Transfer RNA biogenesis [BR:xao03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    XAC29_19990
Prokaryotic type
   tRNA splicing ligases
    XAC29_19990

SSDB

Motif

Pfam:

RtcB Hexapep Gam

Other DBs

NCBI-ProteinID:

AGH79391

UniProt:

M4U1C9

Position

4640235..4641458

AA seq 407 aa
MSTSQHFEFLHAEGSTTPIKGWVRGVPLEEQAHAQLRNIAAVPFVGPWVAVMPDVHLGKG
ATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAADLPDNLAQLRASIERSVPVGNGRG
GEHRKLPDSIESRIAQSGLVQRLDAIKQQHKRIRTDKLDCQIGTLGGGNHFIEICLDGTD
AVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYVEAV
SWAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHGGEELLITRKGA
VSARAGELGIIPGSMGTRSYIVRGLGNADSFHSCSHGAGRVMSRTAARAQITLAQHREAT
AHVECRKDAAVIDESPAAYKSIDAVMAAQQDLVEVLHTLRQVVCIKG

NT seq 1224 nt +upstreamnt +downstreamnt
atgagtacatcgcaacactttgaatttctgcacgccgaaggcagcacgaccccgatcaag
ggctgggtacgcggcgtgcccctggaagaacaggcacatgcgcagctgcgcaatatcgcg
gcggtaccgtttgtcggtccgtgggtcgcggtgatgccagacgtgcatctgggcaagggc
gcaaccgtgggctcggtgattccgacccgtggcgccatcatcccggcggcggtcggcgtg
gatatcggctgcggcatggctgcagtgcgcaccacactgcgcgccgccgacctgcccgac
aatctggcgcagttgcgtgccagcatcgagcgcagcgtgccggtgggcaacggccgtggc
ggcgagcatcgcaagctgccggacagcattgagagccgcattgcgcagtccgggctggtg
cagcgcctggatgcgatcaagcagcagcacaagcgcatccgtaccgacaagctggactgc
cagatcggcacgctgggcggcggcaaccacttcatcgagatctgcctggacggaaccgat
gcggtatgggtgatgctgcacagcgggtcgcgcggcaccggcaacctgatcggcacgtac
ttcatcgagcgcgcgcgtgagcaactggcacatcgcgtgctgggcttccatctacccgac
aaggacctggccttcttcatgcagggcgagcccttgttcgacgaatacgtcgaagcggtg
tcgtgggcgcaggattacgcccgcgaaaatcgtgaggcgatgatggcgcgcgtgctggcc
gagatgcgtcaccgcctgccgaaattccagctggaaaagctcgcagtcaattgccaccac
aactacgtgcagaaggaaacgcacggtggcgaggaattgttgatcacccgcaagggagcg
gtgagcgctcgtgccggcgagctgggcatcattccgggtagcatgggcacgcgcagctac
atcgtacgtgggttgggcaatgccgacagtttccacagctgcagccacggcgcagggcgt
gtgatgagcaggaccgctgcacgcgcgcagatcaccctggcacagcatcgggaggccacc
gcacatgtggaatgccgcaaggacgcggcagtgatcgatgagtcgcctgcggcgtacaag
tccatcgatgcggtgatggcggcgcagcaggatctggtcgaggtgctgcacaccttgcgc
caagtggtgtgcatcaagggatag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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