KEGG T00581: Xaut

Xanthobacter autotrophicus: Xaut_1470

Entry

Xaut_1470 CDS T00581

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

xau Xanthobacter autotrophicus

Pathway

xau03410	Base excision repair
xau03420	Nucleotide excision repair
xau03430	Mismatch repair
xau03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:xau03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:xau03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:xau03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:xau03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1679891..1681519)

AA seq 542 aa
MNRFAALLDRMSYEAGRNAKIRLMADYFRTTPDPERGFALAALTGALSFANAKPGVVRAL
IMERADPVLFEMSYDYVGDLSETVALMWPRLEGAPTHAPLLSEIVHGLSTLSRSTLPRRL
ADWLDGLDETGRWALLKLITGAMRVGASARLAKTALASLGSVTPDEVELVWPGLAPPYEE
LFAWVEGHGPRPETSNPAPFRPVMLAHAIEEANFADLAPGDFSAEWKWDGIRVQAVAGTG
ADGVRAVRLYSRTGEDISEAFPDLADAIAFNGAMDGELLIVRAGRVEPFNVLQQRLNRKS
VTVKMLAEFPAHIRAYDLLVDGDEDLRALPFTARRARLEALVTRLSSPRIDLSPLVPFAG
WDDLTRARADPASAGAGPDAGAVEGVMIKRGDSPYLPGRPKGPWWKWKRDPHTVDAVLMY
AQRGHGKRSSFYSDYTFGVWTQGEEGDVLVPVGKAYFGFTDEELKLIDAFVRRATINRFG
PVREVVHEKDEGLVLEVAFEGLARSTRHRSGIAMRFPRIARLRWDKPPGEADRLETLEAL
LR

NT seq 1629 nt +upstreamnt +downstreamnt
atgaaccgcttcgccgccctgctcgaccgcatgtcctatgaagccgggcgcaacgccaag
atccggctgatggcggactatttccgcaccacgccggaccccgagcgcggcttcgccctc
gcggcgctcaccggcgcgctctccttcgccaacgccaagcccggcgtggtgcgcgccctc
atcatggagcgggccgacccggtgctgttcgagatgtcctacgattatgtgggcgacctc
tcggaaaccgtcgccctcatgtggccgaggctggaaggcgccccgacccacgcgccgctg
ctgtccgagatcgtccacggcctctccaccctctcccgctccaccctgccccgccgcctt
gccgactggctggacgggctggacgaaaccggccgctgggcgctgctgaagctcatcacc
ggcgccatgcgggtcggcgcctccgcccgcctcgccaagaccgcgttggcaagccttggc
agcgtcacgccggacgaggtggaactggtatggcccggcctcgcgccaccctatgaagag
ctgttcgcctgggtggaaggtcatgggccgcggcccgagacctccaaccccgcgccgttt
cgcccggtgatgctggcccacgccatcgaggaagccaatttcgccgaccttgcccccggc
gatttcagcgccgaatggaagtgggacggcatccgcgtgcaggcggtggccggcaccggg
gcggatggggtgcgggcggtgcggctttattcccgcaccggtgaggacatctccgaggct
tttcccgatctggcggacgccatcgcctttaacggcgccatggacggggagttgctgatc
gtccgcgcggggcgggtggagccgttcaacgtgctccagcagcggctcaaccgcaaaagc
gtgacggtgaagatgctggcggaatttcccgcccacatccgtgcctacgatttgctggtc
gatggcgacgaggacctgcgcgccctgcccttcaccgcgcggcgggcgcggctggaggcg
ctggtgacccggctgtcgtcgccgcgcatcgacctctccccgctggtgcccttcgccggc
tgggatgacctcacccgcgcccgcgcggaccccgcatccgccggcgcggggccggacgcc
ggcgcggtggaaggggtgatgatcaagcgcggcgacagtccctacctgcccggccgtccc
aaggggccgtggtggaaatggaagcgcgatccgcacacggtggacgccgtgctcatgtat
gcccagcgcggccacggcaagcgctcgtccttttattccgactacaccttcggggtgtgg
acgcagggcgaggagggcgatgttctggtgcccgtgggcaaggcctatttcggcttcacc
gacgaggagctgaagctgatcgacgccttcgtgcggcgcgccaccatcaaccgcttcggc
ccggtgcgggaagtggtgcatgagaaggacgaggggctggtgctggaagtggccttcgag
ggcctcgcccgctccacccgccaccgctccggcatcgccatgcgcttcccccgcatcgcg
cgcctcaggtgggacaagccgccgggcgaggccgaccggctggagacactggaggcgctg
ctgaggtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-XAU (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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