KEGG T00581: Xaut

Xanthobacter autotrophicus: Xaut_4365

Entry

Xaut_4365 CDS T00581

Gene name

ligD

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

xau Xanthobacter autotrophicus

Pathway

xau03410	Base excision repair
xau03420	Nucleotide excision repair
xau03430	Mismatch repair
xau03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:xau03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:xau03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:xau03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:xau03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(4836935..4839595)

AA seq 886 aa
MATDKLSTYKAKRDFQLTQEPSGGATASASNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKMSPE
QALAQGDLKFTLDGERLHGSFVLVRMANDRDRGKRTNWLLMKHRDAFAVAANGAAILDDY
DTSVASGRTMAAIATGKGRKPSVFMVQGGKVESDAVWDSRTGLAAEARKAPARRSKTPDK
IATADLPDFIAPQLCQTVERPPSAAGWLHEIKFDGYRVQMRVRDGKVTLKTRKGLDWTAR
FAAIARAAGKLPDAIIDGEICALDNNGAPDFAAIQAALSEGKTDGLVYFAFDLLFEGGED
LRSLPLAERKGRLQQFLIGAGEDARLRFVEHFDTGGEAVLRSACRLSLEGIVSKRADAPY
VSGRTDTWAKSKCRAGHEVVIGGYATTAGKFRSLLVGVHRGDSFVYVGRVGTGYSAAKVR
GLLPKLQAVKRAKSPFTGICAPKQEPGVVWLKPELVAEIEFAGWTSDGLVRQASFKALRE
DKPADEVQADTPAAPETAEVPQPAPRKSSESTEPSKSARRGGKVDVMGVLISSPDKVLWP
DANDGRPVTKEDLARYYEAVGPWLIDHIRGRPCSIIRAPDGIGGTQFFQRHAMPGTSSLL
ELVTVFGDKKPYLQIDRVEGLAAVAQVGALELHPWNCVPQHPEVPGRLVFDLDPGPDVPF
STVVEAAREMRQRLDALGLVSFCKTTGGKGLHVVTPLAVSRRNPLSWPQAKGFARDVCLQ
MVRDNPELYLIKMTKALRTGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWDEVTA
DLDPRRFTLRTVPGLLAKSAPWDDYSDGERPLEPAIRRLGKAMKAA

NT seq 2661 nt +upstreamnt +downstreamnt
atggcgacggacaagctctctacctacaaggcgaagcgcgatttccaactgacacaggag
ccgagtggcggcgcgacagcgagcgcctcgaaccgccgccgcttcgtcatccagaagcat
gacgccacgcggttgcactacgatctccgactggaactcgacggcgtcttcaagtcctgg
gcggtgacccgcggtccttccctcgacccccacgacaagcgcctcgccgtggaagtggaa
gatcatccgctcgactatggcgactttgaagggacgatccccaagggccaatacggcggc
ggcacggtcatgctctgggaccggggctactgggagccggaaggcaagatgagccccgag
caggcgttggcgcagggcgatctcaagttcaccctcgacggggagcggctgcatggcagc
ttcgtgctggttcgcatggccaatgaccgcgaccggggcaagcgcacaaactggctcctg
atgaagcatcgcgacgcattcgcggtcgcggcgaacggcgctgcgatcctcgacgactac
gacacgtccgtcgcgtcgggccgcaccatggcggccatcgccacgggaaaggggcgcaag
cccagcgtcttcatggtgcagggaggcaaggttgagtccgatgcggtctgggacagtcgc
acaggcctcgcggccgaggcgcgcaaggcgccggcacggcgaagcaagacgccggacaag
atcgcgaccgccgatctccccgatttcatcgccccgcagctgtgccagaccgtggagcgc
ccgccttctgcggccggttggcttcacgaaatcaagtttgacggctaccgcgtccagatg
cgggtgcgtgacggcaaggtgaccttgaagacccgcaagggtctcgattggaccgcaaga
tttgcggccatcgcgcgagccgccggcaagctgccggacgcgatcattgatggcgagatc
tgcgccctggacaacaacggcgccccggatttcgcggcgattcaggcagccctttccgag
ggcaagaccgatggactcgtctatttcgccttcgacctcctgttcgaagggggcgaggat
ctgcggtccttgccactggccgagcgcaagggtcgattgcagcagttcctgatcggtgcc
ggcgaggatgcccggctgcggttcgtcgagcatttcgacaccggcggcgaggcggtgctg
cgctcggcctgccgcctctcgcttgagggcatcgtgtcgaagcgggcggatgcgccctac
gtctccgggcgaacggacacctgggcaaagtccaagtgccgcgcgggacatgaggtggtc
atcggtggctacgcgaccaccgccggaaaattccgttcgctcctcgttggcgtccaccgt
ggcgacagcttcgtctatgtggggcgcgtcgggacggggtacagcgcggcgaaggtcagg
ggcctcctgccgaaacttcaggcggtcaagagggcgaaatcgcccttcaccggcatctgc
gcgccgaagcaggagcccggcgtggtctggctcaagcccgaacttgtcgccgagatcgag
ttcgccggttggacatccgacggcctcgtccgccaggcctctttcaaggccttgcgtgag
gacaagccggcggacgaggtgcaggccgacacgccggctgcgcccgagaccgctgaggtg
ccgcagccggcgccgcgcaagtcgtccgagagcaccgagccgtcgaagtcagcccgccgc
ggcggcaaggtcgacgttatgggtgtcttgatctcgagccccgacaaggtgctctggccg
gacgccaacgacggccggccagtcaccaaggaggatctggcccgctattacgaagctgtc
ggcccttggctgatcgaccatatccggggccggccgtgctccatcatccgggcgccggat
gggatcggcggcacgcaattcttccagcgccacgccatgccgggaacgtccagcctgctg
gaactcgtgaccgtcttcggcgacaagaagccgtatcttcagatcgatcgcgtggaaggg
ctggccgccgtcgcccaggtgggcgctttggagttgcatccctggaattgcgtgccccag
catccggaagtgcccggtcgcctcgtcttcgatctcgaccctggcccggacgtgccgttc
tcgacggtcgtcgaagccgcgcgggagatgcgccagcggctcgatgcactcggcctggtg
agcttctgcaagacgaccggcggaaaaggcctgcatgtcgtcacgccgctggcggtgtcc
aggcgcaatccgctctcctggccgcaggccaagggcttcgcgcgggatgtctgcctgcag
atggtgcgcgacaatccggagctctatctgatcaagatgaccaaggccctgaggacaggc
cgtatcttcctcgactatctgcgcaacgatcgcatggcgaccgccgtggcgccgctttct
ccccgcgctcggcccggcgccaccgtctccatgcccctcacctgggacgaggtcacagcc
gatctcgacccgaggcgcttcacgctccgcaccgttcccgggctgttggcgaaaagcgcg
ccctgggatgactacagcgacggcgagcgcccgctggagccggccatccggcggctgggc
aaggccatgaaggcggcgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-XAU (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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