KEGG T01186: XBJ1

Xenorhabdus bovienii: XBJ1_3700

Entry

XBJ1_3700 CDS T01186

Gene name

recD

Definition

exonuclease V subunit alpha (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

xbo Xenorhabdus bovienii

Pathway

xbo03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:xbo03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 AAA_19 Helicase_RecD Viral_helicase1 AAA_11 UvrD-helicase AAA_22 DUF2075 PhoH AAA_25 AAA_16 CbiA SRP54 AAA_28 AAA AAA_14 T2SE MukB AAA_17 Flavi_DEAD AAA_18 NTPase_1 DUF87 Zot

Other DBs

NCBI-GI:

290476677

NCBI-GeneID:

8833325

UniProt:

D3V589

Position

3603551..3605458

AA seq 635 aa
MSDMKLLLQQAVAQKLLRPLDVQFAYAMIENGDPLLLLITALVSAESGAGHVCLPLERIS
PEYLFEGRQPELAASLWFSAGKPNQQQVISALQACSAVSTGESPAPIILSRHALADYRLY
MQRMWQSERRVAEFFASVELSDDIDEVQLHRILDELFGVTAEGEIDWQKVAAAVAVTSRI
SVISGGPGTGKTTTVAKLLAALIKLNEGRTLSIQLAAPTGKAAARLTESLSEAVNKLALT
SQQSNSIPEQAQTIHRLLGAQPDSQKLRYHRDNPLSLDILIIDEASMVDLPMMARLIEAL
PPRAKVIFLGDKDQLASVEAGAVLGDICRFAEQGYSAKRAEQLSQLTGCQLTSYSMPDSG
EHTLAVRDCLCLLRKSYRFNSASGIGQLASAVNQGNSAGVSAVLGQSLPDVHFNPLAGDE
DYQRLLMQTAEGYYRYLAMVNEQASDKDILAEFNRFRLLCALREGPFGVSGLNQRVEQLL
HRKGVISLPRSAESGGYAGRPIMILRNDSTLGLFNGDIGIMLRNKDNELKAHFQLSDGTI
KPFQPSRLPQHETAYVMTVHKSQGSEFEHTALVLPTQFSPVVSRELVYTALTRAREKLTL
YAHKPVLDKAVSTSTQRRSGLAEWLKPKGECQSGQ

NT seq 1908 nt +upstreamnt +downstreamnt
atgagtgacatgaaattattgttgcagcaagccgttgcccaaaaattactgcgcccgctg
gatgtgcagtttgcttatgcaatgattgaaaacggagatcctctgttattgctgattacg
gcattggtgagtgcggaatcaggagcagggcatgtctgcctgccattagagcggatctcg
cctgaatatttatttgaggggcggcagcctgaattagcagcatcgctctggttttcggcg
gggaaaccaaatcagcagcaagttatttcagcgttacaagcatgttctgcagtgagcact
ggcgaatctcccgcaccgatcattctttcccgccacgctcttgctgattatcgcctttac
atgcaacgcatgtggcaaagtgagcgtcgggtcgcggagttttttgcgtcggtagaatta
tctgacgatattgatgaagtgcaattacatcgcattttggatgaactttttggtgtcacc
gctgaaggggaaatagactggcagaaagtggcggcggcagttgctgtaaccagccgtatt
tccgttatctctggcgggccagggacaggaaaaacgacgacggtagctaagttgctggcc
gccttgatcaaactgaatgaaggcagaacactgagtattcaattggccgcacccactggt
aaagcggccgccagattgactgaatcgctgagtgaggcagtcaataaactggctttaaca
tcacaacaatcgaatagcattcctgagcaggcacaaacaattcatcgcctgttgggagcg
cagccagatagccagaaactgcgttatcaccgcgataatccgctatctcttgatattttg
atcatcgatgaagcctcaatggtggacttaccgatgatggcacgtttgatagaagccctg
ccaccacgggcaaaagtgatttttctgggggataaagatcagttggcctcggttgaagcg
ggagccgtattgggggacatctgccgcttcgctgaacaaggttatagtgccaagcgtgcc
gaacaattgagtcagttgacaggctgtcagctaacatcgtattcaatgcctgattctgga
gaacatacactggcagtccgggattgcttatgtctgttacgtaaaagctatcgtttcaac
tcggcttcgggtatcgggcaattagcatcggcggttaatcaaggcaatagtgccggggta
tctgccgtcttgggtcagtctttgcctgatgttcacttcaatcctcttgcaggagatgaa
gattatcagcgtttattgatgcaaactgcagaaggttattaccgttatttagcgatggtg
aacgaacaagcatctgacaaagacattttggcagagtttaaccgtttcaggttgttgtgt
gctttgagggaagggccgtttggtgtaagcggcttgaaccagcgggtagagcaattgtta
catcgtaaaggcgttatttctctgcccagaagtgcggagagcgggggttatgccggacgt
cccattatgatcttacgcaacgatagtacactggggctatttaatggtgacattggtatt
atgctcaggaataaggataatgagctgaaagcccattttcagctatctgatgggacgata
aagccatttcagccgagccgattgcctcagcatgaaacggcctatgtgatgactgtccat
aaatcccaaggttctgagtttgaacacaccgcgttagtcttgccgactcaattctcgcca
gttgtcagccgggaactggtgtacacagccttaacccgtgcccgtgaaaaattgacgctt
tacgcacataaaccggttctggataaggcggtgagtacatcaacacagcggcgtagtggc
ttggcagaatggctcaagccaaagggagagtgtcaatcaggtcagtaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (25)   
   Pfam (25)   
All databases (34)   

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