KEGG T00759: xccb100

Xanthomonas campestris pv. campestris B100: xccb100_0115

Entry

xccb100_0115 CDS T00759

Gene name

dnl

Definition

DNA ligase (ATP) (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

xca Xanthomonas campestris pv. campestris B100

Pathway

xca03410	Base excision repair
xca03420	Nucleotide excision repair
xca03430	Mismatch repair
xca03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:xca03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:xca03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:xca03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:xca03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

188989511

NCBI-GeneID:

6320948

UniProt:

B0RLL6

Position

127878..130883

AA seq 1001 aa
MSLRDYTRKRRFDQTPEPAEDAAATAHRQPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRAGEKRLAVQVEDHPLAYAGFEGDIPQGQYGAGHVQVFDHGTWHCDGDALAALDA
GKLDFDLQGDKLRGGFAPVRTRLRGRQPQWLLIKRDDAHAADLDADALVADSDATAQAIE
TPSAAAAPARRAKASRRRRTPAEALVTEKSASASRPRASAATQAHWRTRALALPGARDAA
CPTGLRAQLTLLRAEAPDGAQWLHEIKWDGYRLLTDLVDGQAQLRSRNDQAWTDSFAEVA
TAVQALPVRDARLDGELVVLDAQGRSDFSALQRAIDGTARQPLRYLVFDLLGVAGVDLRA
TPLLERKQLLRALLGETPGTLAYSAHVIGRGPEVFAASADKGWEGIVSRRADAPYRGGRS
ADWVKTKHEDSDEFVVVGYTDPKGARSGFGALLLAQLDGTQLRYVGRVGTGFDSALLGEI
TAQLQALHSPQPTLELPAHIPGRPRDVHWVRPVLIAEVAFRGWAKQGLLRQAAFKRLRED
KPMSDLGGDRATPGKSRGARTRTAAAAAGKASRAAATRTAAVSAGGSAAKPGKAGKSSTA
ADVSTPSRVAKQRVTPAASSAAKPGKPGKSSAAATGNASPRVAKRGAVSAASASSAAKSG
KRSVSSESAASGKPAAPAKAASSKTARAPGMSSAKETSTAPAAPSTRKAKALASAAPDGV
AITHPERVVFPAAGISKGDVAAYYRAVAPLVLPEIARRPLSLLRCPDGAAGMCFFQKHEG
RHLGAHIKAIPLKQKSGTEDYLYIEDVAGLLELVQMNTLELHPWGARVDDPEHPDRLVFD
LDPGDGVAWTQVVAAAREIRSKLRAAGLESAVRLSGGKGLHVVVPIVPQASWDQARDFCE
AFAQALATQAPERYVATMSKAKRHGVIFVDWLRNGRGNTSVCSWSLRAREHATVAVPLRW
EELGKLSGPDAFPLDKAVQRAKRQRNDPWAEVLALKQVLPG

NT seq 3006 nt +upstreamnt +downstreamnt
atgtcgttgcgcgactacacccgcaagcgccgcttcgaccagaccccggagccggccgag
gacgccgcggcgacagcgcatcggcagccgatcttcgtggtgcaactgcatcacgccagt
tcgcgccattacgactttcgcctggaagccgatggcgtgctcaagagttgggcggtgccc
aagggcccgtcgctgcgtgctggcgaaaaacgcctggcggtgcaggtggaggatcacccg
ctcgcatacgcgggcttcgaaggcgacatcccgcaagggcagtacggggcggggcacgtg
caggtattcgaccacggcacctggcactgcgatggcgacgcgttggcggcgctggatgcc
ggcaagctggactttgacctgcagggcgacaagctgcgcggtggctttgcgccggtccgc
acccgcctgcgtgggcgccagccgcagtggctgttgatcaagcgcgacgatgcccatgcc
gccgatctggacgccgatgcgttggtagccgattccgatgccacagcgcaggcgattgag
actccatcggctgcagccgcaccggcgcgccgtgccaaggccagccgtcgtcgacgcacg
ccggccgaggcgttggtgacagaaaaatccgcatccgccagccgcccgcgtgcttccgca
gccacacaggcccactggcgcacgcgcgcactggccttgccgggcgcgcgcgatgcggcc
tgccctaccggcttgcgcgcgcagctgacgttgctgcgtgctgaggcgccggatggtgcg
cagtggctgcacgagatcaagtgggatggctaccggttgttgaccgatctggtcgatggc
caggcgcagctgcgctcgcgcaacgatcaggcctggacggacagctttgcggaagttgcc
acggccgtgcaggcattgccggtgcgcgatgcgcgcctggatggcgaactggtggtactc
gacgcgcaaggccgcagcgatttctctgcgctgcagcgtgccatcgacggcactgcgcgc
cagcctttgcgctacctggtgttcgatctgctcggcgttgccggcgtggatctgcgtgcc
accccgctgctggagcgcaagcagttgttgcgtgcgttgctcggcgaaacgccgggcacg
ctggcctatagcgcgcatgtgatcggccgcggaccggaggtgttcgccgccagtgccgac
aaaggctgggaaggcatcgtcagcagacgcgcggacgcgccgtaccgcggtgggcgcagc
gccgattgggtcaagaccaagcacgaagacagcgacgagttcgtggtggtgggctacacc
gaccccaagggcgcgcgcagcgggtttggcgccctgttgctggcacagctcgacggcacg
cagctgcgctacgtgggccgggtcgggaccggtttcgacagtgccctgctcggcgagatc
accgcgcaattgcaggcattgcacagcccgcagcccacgctggaattgcccgcgcacatt
cccggccggccgcgcgatgtgcactgggtgcgcccggtgttgatcgccgaggtggcgttc
cgtggctgggccaagcagggcctgctgcggcaggcggccttcaagcgtttacgcgaggac
aaaccaatgagcgatctgggcggcgaccgcgccacaccgggcaagtcgcggggagcacgc
acgcggacggctgcagctgctgcgggcaaggcatcacgtgctgcagcgacgcgcactgcg
gcggtatcggctggcggttcggctgcgaagcctggcaaggcgggcaagtcttccactgcg
gccgatgtcagcacaccgtcgcgtgtcgccaaacaacgtgtgacaccggccgccagttcc
gctgccaagccaggaaagccgggcaagtcgtccgcagcggccacgggcaatgcatcgccg
cgtgtggccaaacgaggtgcggtgtctgccgccagcgcatcgtctgcggcgaagtcgggc
aagcgcagcgtttccagcgagtctgcggcgtccggcaagccggccgcgccggccaaagcc
gcatcgtccaagacggcacgcgcgccaggtatgtcgtcggcaaaggaaacgtcaacagca
ccggcagcgccgtccacacggaaagcgaaggcattggcctccgccgcgccagatggcgtt
gccattacgcatcccgagcgcgtggtgttccctgccgccggcatcagcaagggcgatgtg
gccgcgtattaccgcgcggtggcaccgctggtgttgccggagatcgcgcgccggccgttg
tcgttgttgcgctgccccgatggcgctgcaggcatgtgctttttccagaagcacgaaggc
cgccatcttggtgcgcacatcaaggccatcccgctcaagcagaagagcggcaccgaagat
tatctgtacatcgaagacgtagccgggctgctggaactggtacagatgaacaccctggag
ttgcatccctggggcgcgcgggtggatgaccccgagcaccccgaccggttggtgttcgac
ctggatccgggtgacggcgtggcctggacgcaggtggtagccgccgcgcgcgagatccgc
agcaagttgcgtgcggccgggctcgaaagcgccgtgcgcctgtcgggcggcaaggggctg
catgtggtggtgccgatcgtgccgcaggccagctgggaccaggcgcgtgatttctgcgaa
gccttcgcacaggccttggccactcaggccccggagcgctatgtggccaccatgagcaag
gccaagcgtcacggcgtgatctttgtcgactggctgcgcaacgggcgcggcaacaccagc
gtgtgttcgtggtcgctacgcgcgcgcgagcacgccaccgtggcggtgccgctgcgctgg
gaggagttgggcaaactcagcggcccggatgcgttcccgctggacaaggccgtgcaacgt
gccaagcgccagcgcaatgatccctgggcggaagtgctggcgttgaagcaggtgttgcct
ggctag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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