KEGG T01135: Xcel

Xylanimonas cellulosilytica: Xcel_2642

Entry

Xcel_2642 CDS T01135

Definition

DNA ligase I, ATP-dependent Dnl1 (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

xce Xylanimonas cellulosilytica

Pathway

xce03410	Base excision repair
xce03420	Nucleotide excision repair
xce03430	Mismatch repair
xce03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:xce03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:xce03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:xce03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:xce03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

2908437..2910215

AA seq 592 aa
MPPRSAFRGARPHIHGGGAVSRGPVSAAGGSIDSVLFHDVAVTSAGVAATRSRLAKRELL
AAALRAAAHGGMTGGDATADGAAAGEGMAGGAATGGATTGGPGSDDGRAGEEVDVVATFL
SGRVRQRRTGVGWRSLTSLPAPASAPTLTPLDVDAALQTMADAEGPGSAAVRGEAVRRLF
AAATQDEQTFLRGLIVGELRQGALDSLLLDAVAAAADVPLAAVRRAAMFSAPSGPIARAA
LTGGAAALAAFRLEPGRPVRPMLASPAPDVAAALAGIGGPVAVEAKIDGIRVQLHKHGND
VAVYTRSLDDVTERLPELVALLRSLPVATAVLDGEAIALGADGRPLAFQDTAARTGSHDA
DATGRVPLTAFLFDALHLAGRDLVDAPESERFAALERVAPPSALVRRIVTADPDEATAFF
AEVLASGHEGVVVKDLAAPYDAGRRGGAWVKVKPRHTLDLVVLAVERGSGRRSGWLSNIH
LGARVPGAGPDSADGWVMLGKTFKGMSDEMLAWQTARFTELADGPADGWVVRVRPEQVVE
IAFDGVQRSTRYPGGVALRFARVLRYRDDKPAAEADTIDAVRAIAGGNASGG

NT seq 1779 nt +upstreamnt +downstreamnt
gtgccgccccgatccgcgttccgcggcgcgagaccgcacatccacgggggtggcgccgtc
tcgcgcgggcccgtgtcggcggccggtggcagcatcgacagcgtgctgttccacgacgtc
gccgtgacctcggccggagtggccgcgacccgatcgcggctcgccaagcgcgagctgctc
gccgcggcgctccgggccgcggcccacggcggcatgaccggcggcgatgccacggcggac
ggggccgcagcaggcgaggggatggcgggcggggccgcgacgggcggggccacgacaggc
gggcccggttccgacgacggcagggctggtgaggaggtcgacgtcgtcgcgacgttcctc
tcggggcgggtgcggcagcggcgcacgggggtcggctggcggtcgctcacgtcgctcccc
gcgcccgcgtccgcgccgaccctcaccccgctcgacgtggacgccgcgctgcagacgatg
gccgacgccgaagggccggggtcggcggccgtgcgcggcgaggcggtgcgccgtctcttc
gctgcggcgacgcaggacgagcagaccttcctgcgtggcctgatcgtcggcgagctgcgg
cagggagcgctcgactcgctgctcctcgacgccgtcgctgccgccgccgacgtcccgctc
gccgcggtgcggcgggccgccatgttcagcgcaccgtccgggccgatcgcccgcgctgcc
ctgaccgggggcgctgcggccctcgccgcgttccggctcgagcccgggcgtccggtgcgt
cccatgctcgcctcccccgcgcccgatgtcgcggctgcgctggccggcatcggcggcccg
gtcgccgtcgaggcgaagatcgacggcatccgcgtccagctccacaagcatggcaacgac
gtcgccgtctacacccgctcgctcgacgacgtcaccgagcggctgcccgagctcgtcgcg
ctgctgcggtcactgccggtcgccaccgcggtgctcgacggcgaagcgatcgccctgggc
gccgacggccgcccgctcgccttccaggacaccgccgcgcgcaccgggtcgcacgacgcc
gacgcgaccggccgcgtgccgctgaccgccttcctcttcgacgcgctgcacctggccggc
cgggacctggtcgacgcgcccgagtccgaacggttcgccgccctcgaacgcgtggctccg
ccgtcggccctggtgcgccggatcgtgacggcggaccccgacgaggcgaccgccttcttc
gcggaggtgctcgcgagcggccacgagggcgtggtcgtcaaggacctcgccgcgccgtac
gacgccggacgacgcggcggcgcctgggtcaaggtcaagccacggcacacgctcgacctc
gtggtgctggccgtggaacgcggctcgggccgccgctcgggctggctgtcgaacatccac
ctgggcgcccgggtgcccggcgcaggcccggacagcgccgacggttgggtgatgctcggg
aagacgttcaaagggatgtcggacgagatgctcgcgtggcagaccgcccggttcaccgag
ctcgcggacggaccggccgacgggtgggtcgtgcgggtccgtccggagcaggtggtcgag
atcgcgttcgacggcgtgcagcgttcgacgcggtaccccgggggtgttgcgctgcggttc
gcccgggtgctgcgctaccgcgacgacaagccggcggcggaggccgacacgatcgacgcg
gtgcgcgcgatcgcgggcgggaacgcctccggtggttga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-XCE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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