KEGG T01872: XCR

Xanthomonas campestris pv. raphani: XCR_2579

Entry

XCR_2579 CDS T01872

Gene name

ligD

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

xcp Xanthomonas campestris pv. raphani

Pathway

xcp03410	Base excision repair
xcp03420	Nucleotide excision repair
xcp03430	Mismatch repair
xcp03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:xcp03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:xcp03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:xcp03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:xcp03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

384428212

NCBI-GeneID:

12263752

UniProt:

G0CH17

Position

complement(2699703..2702252)

AA seq 849 aa
MSLSEYRRKRSFDKTREPEPGKLLPQGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPAVKRMAVEVEDHPVDYARFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGSKLKGGWHLVRSSKPARQPQWLLFKEDDAYAGSLEADDLLADVAAAPAEDV
RRAGAGKAQRKALTTVPVPRARARNAWTNAALKLTHARRGDITDAAFAPQLAKLGQAPPE
GAQWVHEIKWDGYRILATVTDGQVRLWSRNALEWTDKIPDIRDAIQALNLRSARLDGELI
AGRGTKEDFNLLQATLWGERQVPLALAVFDLLHIDGVEISEAPLRERKQLLQQVLANAPA
GHLAYSSHVEGDGLEAFRVAGEQHFEGIISKRADRPYRAGRSDDWRKTKQLASQEYVVVG
YTAPKGSRTGFGSLLLATPDPQHGWLYVGRVGSGFSDTLMQEVTQHLHGGGKRPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGVGGQQLLRQASLKAVRLDKDIADLADSDTGDVSPAQA
DVANTPARGRKRANKQAPAQGEPTLSSPTKLIYPDIRATKGDVWEYYHAVMDHLLPEIVG
RPLSIIRCPNGAEKPCFFQKHHTAGLERVSSVRLKEETGSNAHYLVVEDAPGLLELVQFN
ALEFHPWGSHAARPDMADRVVFDLDPGPDVPFAEVKRAATDIRKLLAQLELESFLRVSGG
KGLHVVVPLNPGCDWELTKRFAKGFADALAQSEPDRFVATATKRFRNKRIFVDYLRNGRG
ATAVASYSLRGRPGAPVALPLPWSDLAKLHRANAFTLRDVPDKLRRRRKDPWADIAQIQQ
NLARWADQG

NT seq 2550 nt +upstreamnt +downstreamnt
atgagcctcagcgaataccgccgcaagcgcagcttcgacaagacccgcgagccggagcca
ggcaagctgctgccacaggggcaacgggcgatcttcgtggtgcagctgcatcatgccagc
cggcgccactacgatttccgcttgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggccaagctacgacccggcagtgaagcgcatggcggtagaggtggaagaccacccg
gtggactacgccaggttcgagggcgagattccgaagggcgaatacggcggcggccacgtg
gcccagttcgatcatggggtctgggccaccgccggtgacccggaagcacagctggccaag
ggccacctgcgcttcgagttgttcggcagcaagctcaagggcggctggcacctggtgcgc
tcgagcaagccggcccgccagccgcagtggttgctgttcaaggaagacgacgcctatgcc
ggctcgctggaagccgacgatctgctggccgatgtggctgccgcgccagcagaggatgta
cgtcgcgccggggccggcaaggcccaacgcaaggcactcaccaccgtgcctgtgccacgg
gcgcgtgcacgtaacgcctggaccaacgccgcgttgaaactcacgcacgcgcggcgcggc
gacatcaccgatgccgctttcgcaccgcagctggccaagcttgggcaggcgccgccggaa
ggggcgcaatgggtgcatgaaatcaagtgggacggttatcgcatcctggccacggtgacc
gatggccaggtacggctgtggtcgcgcaatgcgctggaatggaccgacaagattcccgat
atccgcgatgcgatccaggcgctcaacctgcgctcggcacggctggatggcgagctgatc
gccgggcgtggcaccaaggaggatttcaacctgctgcaggcgaccttgtggggcgaacgc
caggtgccgctggcgctggcggtgttcgacctgctgcacatcgatggcgtggagatcagc
gaggcgccgctgcgcgaacgcaagcagctcttgcagcaggtcctggcgaatgcgcccgcc
ggccacctggcctacagctcgcatgtggagggcgatgggctggaggcgttccgggtcgcc
ggcgagcagcactttgaaggcatcatttccaagcgtgccgaccggccgtaccgcgccggt
cgcagcgatgattggcgcaagaccaagcagttggccagccaggaatatgtggtcgtcggc
tataccgcgcccaagggcagccgtaccggcttcggctcgctgctgctggccacgccggac
ccgcagcacggctggttgtatgtggggcgggttggttctggcttttcggatacgttgatg
caggaggtgacccagcatctgcacgggggcggcaagcggcctaccgcgcatatccccacc
gaggacaccgatctgcgtggcgccacctggttcgcgccgcggttcgtggtggaggtgttc
tatcgcggtgtcggggggcagcagctgttgcgccaggcctcgctcaaggcggtgcgtctg
gacaaggacatcgccgacctggccgacagcgataccggggatgtcagtcccgcgcaggcc
gacgtggctaacacgcccgcgcgcgggcgcaagcgtgcaaacaagcaagcgcccgcgcag
ggcgagcccacgttgtccagcccgaccaagctgatctacccggacatccgtgccaccaag
ggcgatgtctgggagtactaccacgcggtgatggatcacctgctgccagagatcgtgggg
cggccgttgtcgatcatccgttgccccaacggtgcggaaaaaccgtgctttttccagaag
catcacaccgccgggctggagcgggtgagctcggtgcggttgaaggaagaaaccggcagc
aatgcccactatctggtggtcgaggatgcgcccggactgctggaactggtgcagttcaat
gcgctggaattccacccctggggctcgcatgcggcgcgaccggatatggctgaccgcgtg
gtgttcgatctggatccgggcccggatgtgccatttgccgaggtcaaacgggccgccacc
gatatccgcaagctgttggcgcagctggagctggaatcgtttctgcgcgtgtccggtggc
aagggcctgcacgtggtggtgcccttgaaccccggctgcgattgggagctgaccaagcgc
tttgccaaaggctttgccgacgcgttggcgcaatccgagccggaccgcttcgtagccacg
gcaaccaagcgcttccgcaacaaacgcatttttgtcgattacctgcgcaacgggcgcggg
gccaccgcagtggcgtcgtactcgctgcgcggccgcccgggcgcaccggtggcactgccg
ctgccgtggtcagacctggccaagctgcatcgcgccaacgccttcaccctgcgcgatgtg
ccagacaagttgcgtcgccgccgcaaggacccctgggcagacatcgcgcagattcaacag
aacctggcgcgctgggcggaccagggctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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