KEGG   Xanthomonas citri pv. citri MN11: J163_03553
Entry
J163_03553        CDS       T03780                                 
Name
(GenBank) DNA-directed RNA polymerase subunit omega
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
xcr  Xanthomonas citri pv. citri MN11
Pathway
xcr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:xcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    J163_03553
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xcr03021]
    J163_03553
   03400 DNA repair and recombination proteins [BR:xcr03400]
    J163_03553
Enzymes [BR:xcr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     J163_03553
Transcription machinery [BR:xcr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     J163_03553
DNA repair and recombination proteins [BR:xcr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      J163_03553
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: AJZ01240
UniProt: A0A0U5FI06
Position
complement(3977403..3977702)
AA seq 99 aa
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENADASDKPTVMALREIAARRI
DNALIDEVEKAERERAEREALEWAAAEVVADEDMSKNDD
NT seq 300 nt   +upstreamnt  +downstreamnt
atggcccgcattaccgtagaagattgcctggaagtcgtgaacaaccgttttgagctggtc
atgatggcctccaagcgcgcccgtcagctcgccaacggcgtgcagccgctgatcgagaat
gccgacgccagcgacaagcccaccgtgatggcactgcgcgagatcgccgcacgccggatc
gacaacgcgctgatcgatgaagtcgagaaggccgaacgcgagcgtgccgaacgcgaagcg
ctggaatgggccgccgccgaagtggtcgccgacgaagacatgtccaagaacgacgattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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