KEGG   Xanthomonas citri pv. citri UI7: J159_03024
Entry
J159_03024        CDS       T03733                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
xcu  Xanthomonas citri pv. citri UI7
Pathway
xcu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:xcu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    J159_03024
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xcu03400]
    J159_03024
Enzymes [BR:xcu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     J159_03024
DNA repair and recombination proteins [BR:xcu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      J159_03024
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter MFD_D3 Helicase_C CarD_TRCF_RID ResIII UB2H RecG_dom3_C ERCC3_RAD25_C AAA_16 AAA_30
Other DBs
NCBI-ProteinID: AJY82973
UniProt: A0A7U2Q501
Position
3338646..3342110
AA seq 1154 aa
MPSPTFPSPPLPKSGQLRAYWRAPSSPTALAWSIARAAEAHAGPLLVIARDNQSAHQIEA
DLHALLGEHSALPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTL
LQQLAPLSYIVGGSFDLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFP
MGADTPLRVELLDEDIDSIRVFDPESQRSLDKVDAVKMLPGREVPMDDASIERVLACLRE
RFDVDTRRSALYQDLKSGLAPSGIEYYLPMFFAKTATLFDYLDKRVLPVIATGVSNAADA
FWTQAQNRYEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWASDHARIDEAAPLG
DQPLPPLPVAAKDAPAGQALASFLSHYPGRVLVAADSAGRREALMEVLAAAQLKPELVAD
VPAFLAGTLRFGITVAPLEDGFALDQPQIALLTERQLFPERANQPRRARRVGREPEAIIR
DLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMYEP
FAAGFPFEETGDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHR
LLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDVESIVRMQRDLSEL
VPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEVRGADVELHVASL
IPEDYLPDVHTRLTLYKRISSARDTDALRELQVEMIDRFGLLPDPVKHLFAIAELKLQAN
ALGVRKLDLGENGGRLVFEVKPAIDPMTIIQMIQKQPKIYTMDGPDKLRIKLPMPEGADR
FNAARGLLAALSPG
NT seq 3465 nt   +upstreamnt  +downstreamnt
atgccgtcgcctaccttcccctctccgccgctgcccaagtccggccagctccgcgcctac
tggcgcgcgccatcctcaccgactgcgctggcatggtcgattgcgcgggcagccgaggcg
catgccggcccgctgctggtgatcgcccgcgataaccagagcgcgcaccagatcgaagcc
gacctgcatgccttgctcggcgaacactcggcgctgccggtggtgccgtttcccgattgg
gaaaccctgccctacgaccagttcagcccgcaccccgaaatcatcagccagcgtctggcc
gccctgcaccgcctgcccggcctgacccgcggcgtggtgatcgtgccggtgcagaccttg
ctgcagcagctggctccgctgagctacatcgtcggcggcagtttcgatctcaccgttggc
cagcggctggatctggatgcggaaaagcgccgcctggaaagcgccggctaccgcaatgtc
ccgcaggtgatggacccgggcgactttgccgtccgcggcggcctgctcgacgtgttcccg
atgggcgcggacacgccattgcgggtcgagctgctggatgaggatatcgattcgatccgc
gtgttcgacccggaatcgcagcgttcgctggacaaggtggacgcggtcaagatgctgcct
ggccgcgaagtaccgatggacgatgccagcatcgagcgcgtgctggcctgcctgcgcgaa
cgcttcgacgtggatacccggcgcagcgcgctgtaccaggacctgaaatccgggctggcg
ccgtcgggcatcgagtattacctgccgatgttcttcgccaagaccgcaacgctgttcgat
tatctggacaagcgggtactgccggtgatcgccactggcgtgtccaatgccgccgacgca
ttctggacccaggcgcagaaccgctatgaacagcgccgccacgatgtggaacgcccgctg
ctgccgccggacgagctgtaccaatcgccggatgcgctgcgcgagcggctcaacaagctg
gcgcgtatcgaagtgtgggccagcgatcatgcgcgcatcgacgaggccgctccgctcggc
gaccaaccgttgccgccgctgccggtggctgccaaagacgctcccgccggtcaggcgctc
gcatcgttcctgagccattacccgggccgcgtgctggtcgctgccgattcggccggccgc
cgcgaagccttgatggaagtgctggccgccgcgcagttgaagccggagctggtcgccgat
gtgccggcgttcctggccgggacgctgcggttcggcattaccgtggcgccgctggaagac
ggctttgcactggatcagccgcagattgcgctgctgaccgaacgccagctgttcccggaa
cgggccaaccagccgcgccgcgcgcgccgggtcggacgcgagccggaagcgatcatccgc
gatctgggcgagctgtccgaaggcgcaccgatcgtgcacgaggaccacggcgtcggccgc
taccgcggcctgatcgtgctcgatgccggcggcatgcccggcgaattcctggaaatcgaa
tacgccaagggcgaccggctgtatgtgccggtggcgcagctacatctgatcagccggtat
tccggcgcctcggccgagaccgcgccgctgcactcactgggcggcgagcaatggaccaag
gccaagcgcaaggcggccgaaaaggtccgcgacgtcgccgccgaattgctggaaatccag
gcgcgccgacgcgcgcgcgcgggtctggcgttgcaggtggaccgggcgatgtacgagccg
ttcgcggccggatttccgttcgaagaaaccggcgaccagcttgccgccatcgatgcgacg
ctgcgcgatctgggcagcagccaaccgatggaccgtgtggtgtgcggcgacgtcggtttc
ggcaagaccgaggttgcggtgcgcgccgccttcgccgccgccagcgccggcaagcaggtc
gccgtgctggtgccgaccacgttgctggccgaacagcattaccgcaatttccgcgaccgg
ttcgccgattacccgatgaaggtggaagtgctttcccgcttcaagagcaccaaggaaatc
aaggcagaactggaaaaggtcgccagcggcgacatcgacgtgatcatcggcacgcaccgg
ttgttgcagccggacgtgaagttcaaggatctcgggctggtggtcgtcgacgaagaacaa
cgcttcggcgtgcggcaaaaagaagcgctcaaggcgatgcgtgccaacgtgcatctgctc
acgctcaccgccacaccgatcccgcgcacgctcaacatggccatggcaggcctgcgcgat
ctgtcgatcatcgcgaccccgccgccgaaccgcctggcggtgcagaccttcattaccgcg
tgggacaacacactgctgcgcgaggccttccagcgcgaactcagtcgcggtggtcagctg
tatttcctgcataacgatgtggaaagcatcgtgcgcatgcagcgtgatctctccgagctg
gtgccggaagcgcgcatcggcatcgcgcatgggcagatgcccgagcgcgagctggaacgg
gtgatgctggatttccagaagcagcgcttcaatgtcttgctgtcgaccacgatcatcgaa
tcgggcatcgacattcccaatgccaacaccatcatcatcaaccgcgccgaccgctttggc
ctggcgcagctgcatcagttgcgcggccgcgtgggtcgctcgcatcaccgcgcctacgcg
tacctggtggtgcctgaccggcgctcgatgacctccgatgcagaaaagcgcctggaagcg
atcgcctcgatggacgagctcggcgccggcttcaccctggccacgcacgatctggaaatc
cgcggcgccggcgaattgctgggcgaagaccagagcggccagatggccgaggtcggtttc
agcctgtataccgaactgctcgagcgcgcagtgcgcagcatccgccagggcaagctgccc
gacctggacgccggcgaagaagtgcgcggcgccgacgtcgagttgcatgtggcctcgctg
attcccgaggattatctgcccgacgtgcatacgcgcctgaccttgtacaagcgcatttcc
agcgcacgcgacaccgatgcgctacgcgaactgcaggtggagatgatcgaccgcttcggc
ctgctgccggacccggtcaagcatctgttcgccattgccgagctcaagctgcaggccaac
gcgttgggcgtgcgcaagctggatctgggcgaaaacggcgggcggctggtgttcgaggtc
aagccggcgatcgacccgatgaccatcatccagatgatccagaaacagccgaagatctac
acgatggacggcccggacaaactgcgcatcaagctgccgatgcccgaaggcgccgaccgt
ttcaatgccgcacgcggcttgttggcggcgttgtcgccggggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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