KEGG   Xenorhabdus doucetiae: XDD1_3360
Entry
XDD1_3360         CDS       T03784                                 
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
xdo  Xenorhabdus doucetiae
Pathway
xdo03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xdo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    XDD1_3360 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xdo03400]
    XDD1_3360 (recD)
Enzymes [BR:xdo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     XDD1_3360 (recD)
DNA repair and recombination proteins [BR:xdo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     XDD1_3360 (recD)
SSDB
Motif
Pfam: AAA_19 RecD_N AAA_30 Viral_helicase1 UvrD_C_2 Helicase_RecD AAA_11 SH3_13 UvrD-helicase AAA_22 SLFN-g3_helicase AAA_16 nSTAND3 UvrD_C PhoH CbiA AAA_28 DEAD SRP54 T2SSE AAA_24 FtsK_SpoIIIE DO-GTPase1 MukB AAA_14 Pif1_2B_dom AAA_5 ATPase NTPase_1 AAA ResIII DUF87
Other DBs
NCBI-ProteinID: CDG19050
UniProt: A0A068QYY7
Position
complement(3552672..3554588)
AA seq 638 aa
MSAMMSLLQQAVSQKLLRPLDVQFAYAMIEDENPLLLLITALLSAESGAGHVCLPLERIA
PKYFFDGRQPELAASLWSLVGEPGQAQILAVLQASPAVSAGESPAPMILTHQRETGYRLY
LQRMWQSERRVADFFAAVALTEAFDPTAHDQTALDEIQLRRILDDLFGVTAGGEIDWQKV
AAAVAVTRRISVISGGPGTGKTTTVAKLLAALIKLHEGKKLTIQLAAPTGKAAARLTESL
REAVKKLDLTPEQWRSIPEQAQTLHRLLGAQPDSQKLRYGRDNPLSLDILIIDEASMVDL
PMMAHLIEALPSQAKVIFLGDKDQLASVEAGAVLGDICRFAEQGYSAERAEQLGRLTGCP
LTAYSTSISGENAPAVRDCLCLLRKSYRFNSASGIGQLASAVNQGDRAGVAAVLNHSFPD
VTFYPLAEDADYQRLLAETAAGYYPYLAMVNERAAEKTILAEFNRFRLLCALREGPFGVT
GMNQRVEQLLHRQGMITLPKNVESRGYVGRPIMILRNDSTLGLFNGDIGIMLNNQNNELK
AYFQLSDGQIKGFQPSRLPQHETAYVMTVHKSQGSEFEHTALVLPTQYSPIISRELVYTA
LTRAREKLTIYAHKPVLDKAVATTTQRRSGLAEWLNPQ
NT seq 1917 nt   +upstreamnt  +downstreamnt
atgagtgccatgatgtcattattgcaacaagcagtgagccagaagctgctgcgtcctttg
gatgtgcaatttgcttatgcgatgatcgaggatgaaaatccgctgttactgttgattacg
gcactgttaagtgctgaatcaggcgcggggcatgtctgtttgccgctggagcggattgcg
ccgaaatatttttttgacggccggcaaccggaattagcagcatcgctttggtctttggtc
ggggaacccggtcaagcgcagattctggcggtcttgcaggccagcccggcggtgagtgcg
ggggaatctccggcaccgatgatcctgactcatcagagggaaacgggttaccgcctctat
ttacaacgcatgtggcaaagtgaacggcgggtggcggatttttttgctgcggtggcgttg
actgaggcttttgacccaaccgctcatgatcaaactgcccttgatgaaatccagttacgt
cgcatcctggatgatctttttggtgtcactgctggtggggaaatcgattggcagaaagtg
gcggcggcagtggcggtcacccgccgtatttcggtgatctctggcgggccgggaaccgga
aaaaccacgacagtggctaaattattggctgccctgattaaattgcatgaagggaaaaaa
ttaacgattcaattggcggcacccaccggcaaggcggcggcaaggttgactgaatcgctg
agggaagcggtcaaaaaactggatttgacgccagaacagtggcgcagcattccagaacag
gcgcaaactcttcatcgcttattgggggcacaaccggatagccagaaattgcgttatggt
cgtgataatccactctccctggatattttgatcatcgatgaagcctcaatggtggattta
ccgatgatggctcacttgattgaggctttgccgtcgcaggcgaaagtgattttcttgggg
gataaagaccagcttgcctcggttgaagccggagcggtattgggggatatttgtcgtttc
gctgaacagggttatagcgccgaacgtgctgaacagttggggcgattgaccgggtgcccg
ttaaccgcttattccacctcaatttccggtgaaaatgcgccagccgtgcgggattgcctg
tgcctgttgcgcaaaagctatcgtttcaactctgcgtctggtattgggcaattggcctct
gcggtgaatcagggggatcgcgcgggagtcgcagcggtgctgaatcactcttttcctgat
gtcactttttatccccttgcagaggatgcagattatcaacgcctgttggcggaaaccgct
gcggggtattacccctatttggcgatggtcaatgaacgggcagcagaaaaaaccattttg
gcggagtttaaccgttttcgcttgttgtgcgcgttaagggaaggcccgtttggtgtgacg
gggatgaatcagcgggtggaacaattactgcaccggcaaggcatgattacgctgcccaaa
aatgtggagagccggggttatgtcgggcgtccgattatgatattgcgtaatgacagtacg
cttgggctgtttaacggcgatatcgggattatgctcaacaatcagaataatgagctgaaa
gcctatttccagttgtctgatgggcagattaaaggcttccagccaagccgattacctcaa
catgagacggcgtatgtgatgacggtgcataaatctcaagggtcggaatttgagcatacg
gccttggtcttaccgacccaatactcaccgataatcagtcgggaattggtctataccgca
ctgacgcgggcgcgggaaaaattaacgatttatgcccataagcccgtgttggataaggct
gtggcgacaacaacacaacggcgaagcgggctggccgagtggctcaacccgcaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (32)   
   Pfam (32)   
All databases (42)   

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