KEGG   Xylella fastidiosa M12: Xfasm12_2239
Entry
Xfasm12_2239      CDS       T00677                                 
Name
(GenBank) primosomal protein N'
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
xfm  Xylella fastidiosa M12
Pathway
xfm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:xfm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Xfasm12_2239
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xfm03400]
    Xfasm12_2239
Enzymes [BR:xfm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Xfasm12_2239
DNA repair and recombination proteins [BR:xfm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Xfasm12_2239
SSDB
Motif
Pfam: PriA_C PriA_3primeBD DEAD ResIII Helicase_C AAA_30 PriA_CRR zinc-ribbons_6 AAA_19
Other DBs
NCBI-ProteinID: ACA13090
Position
2365729..2367930
AA seq 733 aa
MPPTILRVALPIPLPQCFDYLPPSGIPLPDSTLGCRIRVPFGKRELIGVVVELPSAEMSV
PLREAFAWIDRIPILDGELAQSLQWLSHYTHTPLGEILATALPGLLRHGKPLPETWTCWA
WRLTETGHTAAPKLRRNSRSAQLAELLTASDQTEDALNTRMNHWRAVARNLTKRGYVERI
KKPTTVPVIIQTTSNTVPVLNTEQQKAVETLNANVGFKIYLLDGVTGSGKTEVYLQAIAT
CLAASKQALVLVPEIGLTPQLLTNFHARLGIPVHALHSKLADSERARVWATARCGEARLV
LGTRSAVFTPLPHAGLIIVDEEHDTSYKQQDGIRYNARDFALLRGKALNVPVILGSATPS
LESLYNAHNGRYKHLRLTYRAGQAYAPQVRVLDVRKRPLKDGLSPEVLTGINATLARDEQ
VLVFKNRCGYSPVLLCHDCGWTATCQQCSTSVHHTPMTVYSGGTYLQCHHCNARQPMPLS
CPDCGSTALQPQGIGTERLEARLIEAFPKHPVVRIDRNTTQHRDGLKTQFTKLGNAAGIL
VGTQILAKGHHLPRLTMVVVVGIDEGLFSADFRATEKLSQQLIQVAGRAGRAKHAGEVWL
QTHHPDHPLLQTLINGGYHTFANTELQQRQAAGLPPFAHLALLRAEAKDTTSTQQFLATV
RKHMPTNNAVECYGPMSAPMPRRAGYERYQLLLSSSQRNALHRTLNILIPAIHSLPEARR
VRWSLDVDPVDLY
NT seq 2202 nt   +upstreamnt  +downstreamnt
atgccccctactatcctacgtgtggcgttgccaatccctttaccgcaatgcttcgactat
ctgccgccaagcggcataccactcccagattcaaccttaggctgccgcatacgtgtgcca
ttcgggaaacgtgagctgatcggtgtagtggtcgaacttccatcagccgaaatgtcggta
ccattacgcgaggcattcgcctggattgaccgtataccaattctagatggcgagctggca
caatcgttacagtggctgtcacactacacgcataccccactaggtgagatattagctacg
gctcttcccgggctgttacgtcatggtaaacccttaccagagacctggacctgctgggct
tggcgtctaaccgaaaccgggcacactgccgctcccaagctgcgtcgcaacagccgctca
gcacaactggctgaattactcaccgccagtgatcaaacggaagatgcacttaacactcgg
atgaatcactggcgcgcagttgcacgcaacctaaccaagcgtggttatgtcgaacgcatc
aagaaacctacaaccgtacctgtaatcatccagaccacaagcaacaccgtacctgtactc
aacactgaacaacagaaagcagttgagacactaaacgctaacgtaggcttcaaaatttat
cttctagatggagtcaccggcagcggtaaaacagaagtctacctacaagccatcgctacc
tgcttagctgcgagtaaacaagcattggtcttagtccctgagatcggcttgacacctcaa
cttctaaccaacttccatgcccgcctcggaatacccgtgcatgccctgcactccaaattg
gcagacagcgaacgcgcccgcgtgtgggcgacggcacgatgtggcgaggcacgactggta
ctaggaactcgctcagcggtgttcacccccctacctcatgccggactaattatagtagat
gaggaacacgacacgagttacaagcagcaagacgggatacgttacaacgcgcgcgatttc
gcattgttgcgcggcaaggcactaaacgtaccggtcatcctcgggagtgccactccgtca
ctggaatcactgtacaacgcgcataacggacgctataagcacctccgcctcacctaccgt
gccggtcaagcgtatgcccctcaggtgcgcgtactagacgtgcgcaaaagaccactgaaa
gacggcctatcacccgaggtattaacaggaattaacgcaactttagcgcgtgatgagcag
gtactcgtattcaagaaccggtgcggctattcaccagtgttgctatgtcacgactgcggc
tggaccgctacctgtcagcagtgcagtacatcagtgcaccacacaccaatgactgtatac
agcggcggaacctacttacagtgccaccactgcaacgcacgccagccaatgccactatca
tgcccagactgcggcagtacagcgctacagccgcagggcataggcaccgaacgcctagaa
gctcgcctgattgaggctttccctaaacaccctgtggtgcgtatcgatcgcaacacaacc
cagcaccgcgacggactaaaaacccaattcaccaaactcggcaatgccgctggcatttta
gtaggcacccagattctagccaaagggcatcacctaccacgcttaacgatggtcgtggtc
gttggaatcgacgaaggcctattctcagccgacttccgcgccactgaaaagctctcccag
caactgatccaagttgctggccgcgctggccgtgctaaacatgccggagaagtctggcta
caaactcaccaccctgatcaccctctgttgcaaacactaatcaacggcggctaccacacc
tttgctaatacggagctacaacaacgccaagccgctgggttgccgccattcgcacacttg
gcactcctgcgtgctgaagcgaaagacaccacctcaacacaacaatttctcgccacggta
cgcaaacacatgccaaccaacaatgcagtcgaatgctacggcccaatgtcggctcccatg
ccgcgccgcgccggctacgagcgctaccaattattgctgtccagctcccaacgtaacgca
ctacaccgcacactcaatatcttgataccagcgattcattcactgccagaagcacgccga
gtccgctggtcgttagacgtggatccagttgatctttactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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