KEGG T00692: XfasM23

Xylella fastidiosa M23: XfasM23_0126

Entry

XfasM23_0126 CDS T00692

Definition

(GenBank) formamidopyrimidine-DNA glycosylase

K10563

formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]

Organism

xfn Xylella fastidiosa M23

Pathway

xfn03410

Base excision repair

Brite

KEGG Orthology (KO) [BR:xfn00001]
Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    XfasM23_0126
Enzymes [BR:xfn01000]
3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     XfasM23_0126
4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     XfasM23_0126
DNA repair and recombination proteins [BR:xfn03400]
Prokaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     XfasM23_0126

SSDB

Motif

Pfam:

Fapy_DNA_glyco H2TH zf-FPG_IleRS

Other DBs

NCBI-ProteinID:

ACB91583

JGI:

XfasM230126

UniProt:

B2I676

Position

176297..177112

AA seq 271 aa
MPELPEVETTLRGLLPYLTNQLIYSLTLRRRTLRWDIPSHIESRLPGHRITTVCRRAKYL
LIDTNAGGSLIIHLGMSGTLRLLAPETPLRPHDHVDIMLNNRRVLRFNDPRRFGCLLWQE
DGQIHPLLQRLGCEPLSDSFNGDYLYQCSRARNVSVKTFLMDQRIVVGVGNIYAAESLFR
AGISPLCEADKISLQRYRRLAEVVKDILLYAINRGGTTLRDFLSPDGRPGYFKQELFVYG
RQQQPCKQCGSLLRQTTIRQRTTVWCGHCQG

NT seq 816 nt +upstreamnt +downstreamnt
atgcctgaactcccagaagtcgaaaccacattgcgtggactgttgccctatttgaccaat
caactgatctattctcttaccctgcgtaggcgtaccttgcgctgggatatcccttcccat
atcgaaagtcgtctcccaggccatcgcatcactactgtgtgtcgtcgggccaaatacttg
ctgatcgatactaatgcagggggaagtctcatcatccaccttggcatgtccggtactctg
cgcttactggcgccagaaacgcctctacgcccacacgatcatgtggacattatgttgaat
aaccgtcgtgtgctacggttcaatgaccctcgccgcttcggatgcttgctctggcaagaa
gatggacaaatccaccctctcctacagcgcctcggctgcgaaccactctcagatagtttt
aatggtgattatctttatcagtgcagccgtgctcgcaatgtgtccgtgaaaacgtttctc
atggaccaacgcattgtggtcggtgtcggtaatatctatgctgctgaaagtttgttccgt
gccggtatcagccctctatgcgaggctgacaaaatatccctccaacgctatcggcgcttg
gctgaagtggtcaaggatatcctcctatatgccatcaaccgtggaggaactaccttgcgg
gatttcctcagtcccgatggacgccccggctacttcaagcaggaattgtttgtctacggt
cgtcagcaacagccttgtaagcagtgtggaagcctcctgcgtcaaaccactatcagacag
cgaactactgtctggtgcggccactgccaaggttga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

Download RDF

DBGET integrated database retrieval system