Entry |
|
Definition |
(GenBank) formamidopyrimidine-DNA glycosylase
|
KO |
|
Organism |
xfn Xylella fastidiosa M23
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:xfn00001]
Genetic Information Processing
Replication and repair
03410 Base excision repair
XfasM23_0126
Enzymes [BR:xfn01000]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
XfasM23_0126
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
XfasM23_0126
DNA repair and recombination proteins [BR:xfn03400]
Prokaryotic Type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
XfasM23_0126
 |
SSDB |
    |
Motif |
 |
Other DBs |
NCBI-ProteinID: JGI: UniProt: |
Position |
176297..177112
 |
AA seq |
271 aa  
MPELPEVETTLRGLLPYLTNQLIYSLTLRRRTLRWDIPSHIESRLPGHRITTVCRRAKYL
LIDTNAGGSLIIHLGMSGTLRLLAPETPLRPHDHVDIMLNNRRVLRFNDPRRFGCLLWQE
DGQIHPLLQRLGCEPLSDSFNGDYLYQCSRARNVSVKTFLMDQRIVVGVGNIYAAESLFR
AGISPLCEADKISLQRYRRLAEVVKDILLYAINRGGTTLRDFLSPDGRPGYFKQELFVYG
RQQQPCKQCGSLLRQTTIRQRTTVWCGHCQG |
NT seq |
816 nt  +upstreamnt +downstreamnt
atgcctgaactcccagaagtcgaaaccacattgcgtggactgttgccctatttgaccaat
caactgatctattctcttaccctgcgtaggcgtaccttgcgctgggatatcccttcccat
atcgaaagtcgtctcccaggccatcgcatcactactgtgtgtcgtcgggccaaatacttg
ctgatcgatactaatgcagggggaagtctcatcatccaccttggcatgtccggtactctg
cgcttactggcgccagaaacgcctctacgcccacacgatcatgtggacattatgttgaat
aaccgtcgtgtgctacggttcaatgaccctcgccgcttcggatgcttgctctggcaagaa
gatggacaaatccaccctctcctacagcgcctcggctgcgaaccactctcagatagtttt
aatggtgattatctttatcagtgcagccgtgctcgcaatgtgtccgtgaaaacgtttctc
atggaccaacgcattgtggtcggtgtcggtaatatctatgctgctgaaagtttgttccgt
gccggtatcagccctctatgcgaggctgacaaaatatccctccaacgctatcggcgcttg
gctgaagtggtcaaggatatcctcctatatgccatcaaccgtggaggaactaccttgcgg
gatttcctcagtcccgatggacgccccggctacttcaagcaggaattgtttgtctacggt
cgtcagcaacagccttgtaagcagtgtggaagcctcctgcgtcaaaccactatcagacag
cgaactactgtctggtgcggccactgccaaggttga |