KEGG   Xanthomonas fragariae: BER92_15740
Entry
BER92_15740       CDS       T04667                                 
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
xfr  Xanthomonas fragariae
Pathway
xfr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xfr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BER92_15740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xfr03019]
    BER92_15740
Enzymes [BR:xfr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BER92_15740
Messenger RNA biogenesis [BR:xfr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BER92_15740
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA AAA_22 HEM4
Other DBs
NCBI-ProteinID: AOD15886
UniProt: A0A1Y6H681
Position
3441453..3442847
AA seq 464 aa
MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTSPQPVNAPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGERAPRKSHARRPHGDAPRYAHA
HAGPKKPGGQRSSGPRQAGVAAGAGAGRRDGGRGGSGRPASCGV
NT seq 1395 nt   +upstreamnt  +downstreamnt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tacgaaacccccactgcaatccagcagcaagcgattccgctggtgttggcaggtcatgac
ctgttggccggcgcgcagaccggtaccggcaaaaccgccgcgttcggcctgccgctgctg
cagcatctgggcacctcgccgcagccggtcaacgccccgcgcaagccccgcgcgcttatc
ctgacccccacccgcgagctggccacccaggtacatgacagcctgcgcggctacagcaaa
tacctgcgtatcccgagcgcggtgatctacggcggcgtgggcatgggcaaccagctcgac
gcgctgcgtcgtggcgtggacctgctgatcgcctgtccgggccgcctcatcgaccatatc
gagcgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgatcgc
atgctcgacatgggctttttgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgtcagaccctgctgttctcggccacgttcgaagagaacattaagcagctggcgctg
gagttcatgcgcaacccgatgcagatccaggtcacacctagcaacaccgtggccgagagc
attacccaccgcgtgcacccggtcgacggcgcgcgcaagcgcgatctgctgctgcacctg
ttggcgcaggacagccgcgagcagaccctggtgtttgcgcgtaccaagcatggcagcgac
aagctggcgctgttcctggagaagtccggcatcaagaccgcagcgatccacggcaacaaa
agtcaaggtcagcgcatgcgtgccttgagcgacttcaaggccggccgcgtgactgtgctg
gtggccaccgatatcgctgcgcgcggtatcgatatcgaccagctgccaaaggtcatcaac
tatgacctgccgatggtggctgaggattatgtgcaccgcatcggccgcaccggccgtaac
ggctcgaccggcgaagcgatctcgctggtggcgcaggacgaagccaagctgctgcgtcag
atcgtgcgcatgctgggccgcgatgtcgaaattcgcgacgtaccgggctacgagccgcag
accccgatccgttggggcaacagtgcgccgggccgtgccgaacagccgggtggcgagcgc
gctccgcgcaagagccacgcccgtcgtccgcatggcgatgcaccgcgttatgcgcatgca
catgccggcccgaagaagccgggtggtcagcgcagcagcgggccgcgtcaggccggtgtt
gccgccggtgcgggtgcaggccgtcgcgatggtgggcgtggcggcagtggccggccggcc
agctgcggcgtctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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