KEGG   Xanthomonas hortorum pv. gardneri: BI317_15110
Entry
BI317_15110       CDS       T04668                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
xga  Xanthomonas hortorum pv. gardneri
Pathway
xga03030  DNA replication
xga03410  Base excision repair
xga03420  Nucleotide excision repair
xga03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BI317_15110
   03410 Base excision repair
    BI317_15110
   03420 Nucleotide excision repair
    BI317_15110
   03430 Mismatch repair
    BI317_15110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xga03032]
    BI317_15110
   03400 DNA repair and recombination proteins [BR:xga03400]
    BI317_15110
Enzymes [BR:xga01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BI317_15110
DNA replication proteins [BR:xga03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BI317_15110
DNA repair and recombination proteins [BR:xga03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BI317_15110
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BI317_15110
   MMR (mismatch excision repair)
    DNA ligase
     BI317_15110
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BI317_15110
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT DnaG_DnaB_bind
Other DBs
NCBI-ProteinID: APP85295
Position
complement(3263734..3266235)
AA seq 833 aa
MTVSPDPAQRIDALRHRLEDANYRYHVLDEPQMADVDYDRLMRELEALEAAHPQLASADS
PTQRVGYLAASRFAEVRHALPMLSLGNAFSDEEVAEFVRRISERLEVKQPLFSAEPKLDG
LAISLRYENGEFVQGATRGDGATGEDVSANLRTVKAIPLRLRGEGWPHILEVRGEVYMPR
AAFETYNAQMRLHGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQT
HSAILAQLREWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLPFDIDGVVYKLDDLAGQR
EMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAGVVADQRPPGTQPWQMPTQCPVCGSEIVRE
EGEAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGVVQGVADLYLLT
VDQLLQLRLISTAESPHAFLREAREHLATGAYAQLENTVVSIGVDLAGEREVPQTWQADL
LRAGLPAFDWNRKKIATKWAENLIEAIEKSRDTTLERFLFALGIEHVGESTAKALSAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFLDQPGNQQAIDDLLQRGVRIGDAHPPSPKL
RDALSFASVLEDMDIPKVTPVRAQQLAAAVDSFDALRSAGADALLQAGVPAPVVASVQQW
LERPENAALASAAQQAMETVLSRLPEADVLQTGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGEHGQQP
NT seq 2502 nt   +upstreamnt  +downstreamnt
atgactgtcagcccggatcccgcgcagcgtatcgacgccctgcgtcatcgtctcgaggac
gccaactaccggtatcacgtgctcgacgagccgcagatggccgacgtcgactacgaccgc
ctgatgcgcgaactggaggcgttggaggccgcgcatccgcagctggccagcgccgattca
ccgacccagcgcgtcggctatctggctgcctcgcgctttgccgaagtgcgacatgccttg
ccgatgttgtcgctgggcaatgccttcagcgatgaggaagtggccgagttcgtgcgtcgc
atcagcgagcggctcgaggtcaagcagccgctgttttctgccgagcccaagctcgatggt
ctggcgatcagcctgcgctacgaaaacggcgagttcgtgcagggcgccacgcgtggcgac
ggtgccaccggcgaggatgtcagcgccaacctgcgcaccgtcaaggcgattccgctacgt
ctgcgtggcgaagggtggccacacattctggaagtgcgcggcgaggtgtatatgccgcgc
gccgccttcgaaacctacaacgcgcagatgcgtctgcatggcggcaaggtgttggccaac
ccgcgcaacggtgcggccggttcgctacgtcagctggatgcgcgcatcaccgcgcaacgc
ccgctgagtttcttcgcgtatggcgtgggcgaagtgagcgaaggcgcattgccgcagacc
cattcggcgatcctggcgcagctgcgcgaatggggtttcccggtcagcgccctggtcgag
gtagtgcagggcagtgacgggctgttggcgtattaccagcgcattggtgccgcgcgcgac
gggctgccattcgatatcgatggcgtggtctacaagctcgacgatctggccgggcagcgc
gagatgggctttgtctcgcgcgcgccgcgttgggcgatcgcgcacaaattcccggcgcag
gagcagtccaccacggtggaagcgatcgagatccagatcgggcgtaccggtgcggccacg
ccggtggcgcggctgaagccggtgcatgtggccggggtgatcgtcaccaacgcgaccttg
cacaacgccgaccagattgcgcggctggatgtgcgcgtgggcgatacggtgatcgtgcgg
cgcgccggcgatgtgattccggaagtggccggcgtggtcgccgatcaacggccacccggc
acgcagccatggcagatgcccacgcaatgcccggtgtgcggctcggagatcgtgcgcgag
gagggcgaagcggtgtggcgttgctccggcgagctgacctgcccggcgcagcgtaaggaa
gcgttccggcatttcgtctcgcgccgcgcgatggatgtcgatggcctgggcgaaaaattc
atcgaggtgctggtcgatagcggcgtggtgcagggcgttgccgatctgtatttgctcaca
gtcgatcagctgctgcagttgcgtctgatcagcaccgccgaaagtccgcatgcgttcttg
cgtgaagcgcgcgagcatctggccaccggtgcgtatgcgcagctggaaaacacggtagtc
agtatcggtgtggatctggctggcgagcgcgaggtgccgcagacctggcaggccgatcta
ttgcgcgccggcttgccggccttcgactggaaccgcaagaagatcgccaccaagtgggcg
gaaaacctgatcgaggcgatcgaaaaatcgcgggacaccacgcttgaacgtttcctgttt
gcgctgggcatcgagcatgtcggcgagagcacggccaaggcgttgtcggcctggttcggc
gatctggaactgatccgccacctgccgtggccgctgttcaagcgcgtgcccgatatcggt
ggcgaggtcgcacgctcgctcgggcactttctcgatcagcccggcaatcagcaggccatc
gacgatctgctgcaacgtggcgtgcgcattggcgatgcacatccgccttcgcccaagctg
cgcgacgcgctgagttttgccagcgtgctggaagacatggatatccccaaggtgacgccg
gtgcgtgcgcagcaactggccgccgcagtggactcgttcgatgcgttgcgcagcgccggt
gccgatgccttgctgcaggccggcgtccccgcgccggtcgttgcctcggtgcagcagtgg
ctggagcggccggaaaacgcggccttggccagcgccgcgcagcaggcgatggaaacggtg
ctctcgcgcctgcccgaagccgatgtgctgcagaccggtccgctcgacggccagaccgtg
gtcatcaccggcaccttggccgcattgacgcgcgatgccgccaagcagcgcctggaagcg
ttgggcgcgaaagtcgccggcagcgtctccaagaaaaccgcgtttctggtggctggcgaa
gaagccggttccaagctcgacaaggcgcagtcgctgggcgtggagatctgggacgaagcg
cggctgctggcgtttctcggcgagcacggccagcagccatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

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