KEGG   Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00216
Entry
AMD24_00216       CDS       T04108                                 
Symbol
topB
Name
(GenBank) DNA topoisomerase 3
  KO
K03169  DNA topoisomerase III [EC:5.6.2.1]
Organism
xii  Candidatus Xiphinematobacter sp. Idaho Grape
Brite
KEGG Orthology (KO) [BR:xii00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xii03032]
    AMD24_00216 (topB)
Enzymes [BR:xii01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     AMD24_00216 (topB)
DNA replication proteins [BR:xii03032]
 Prokaryotic type
  DNA Topoisomerases
   AMD24_00216 (topB)
SSDB
Motif
Pfam: Topoisom_bac Toprim_Crpt Toprim RPA_interact_C Surp HypA
Other DBs
NCBI-ProteinID: ALJ56405
UniProt: A0A0P0G7A3
Position
235418..237853
AA seq 811 aa
MGKSLVIAEKPSVATSLARVLGKLSKKGDYFENEQYVITSAIGHLVELCLPNETDKKNRK
WDFSNLPIIPSSFGLKPIKKTVGRFQLICKLLHRQDVVEVINACDAGREGELVFRYLMRL
AKNHKPTRRLWLQSMTGEAIRAGFQNLRREKDVFPLGEAAICRSEGDWLVGINGTRAMTV
FNSGSGRFRLTPVGRVQTPTLSILVEREEKIHSFTPRAYFEILANFSCKEEEYWGRWFDP
LFQRGGDEDDRAERLWDRKKAEAIQAKCQGGQGIAVEEKKESSQSAPLLYDLTSLQKEAN
IRHSLSARRTLQIVQTLYERHKALTYPRTDSRYLPEDYLPVVRSALESIKEGKLHVYAKK
ALAQDWVKPIKRVFDNAKVTDHHAIIPTGVTPRNLDEMETRVYDMIRRRLVAAFYPAAQF
QLTTRTTTVEGESFQSEGKTPIDLGWLSVYGKQLPSQEVLAPIHAGTLLATKMEVVEHQT
KPPARYSEATLLSAMEGAGKLLEEEALREAMHQRGLGTPATRAQIIEGLVTDGYVTRQGR
RLIATAKGIMLMTLLRDIGIQDLCFPELTGEWEYKLKRIEADQFDRDAFMGEIRRFAEKI
VEKTRRFFELSSKKNCQDLEARCPKCHATSFSESFHTYECKSCGLLFWKNVAGRQFTPEE
IRGLLETGSIGPLEGFRSKNGNSFVAKIKLDNAFKVSFDFGDSYSEMERKQAILSSTSIV
GSCPVCHEGKVYDTGFSYCCNRMLAKECTLNIGKVILQKEIPQDQMIKVLQTGKTDLISQ
FVSRKGRRFSAYLILKNGKVKFEFLERQRDA
NT seq 2436 nt   +upstreamnt  +downstreamnt
atgggaaagagcctcgttattgcagaaaaacccagcgttgcaactagcctagcacgtgta
cttgggaagttatctaaaaaaggcgattactttgagaacgagcagtatgtgattacatct
gctatcggccatcttgttgagctttgtttaccaaatgagacagacaaaaaaaacaggaaa
tgggatttttctaaccttcctattattccctccagctttgggctgaagccgattaaaaag
acggtaggccgttttcaactaatttgtaaattacttcatcgccaagacgttgtagaagtt
atcaatgcctgtgatgctggacgtgaaggggagctcgtttttcgctacctcatgcggctt
gctaaaaatcacaagccaactcgcagactttggctacaatccatgaccggtgaggcaatt
cgtgcaggattccaaaacttacggcgggaaaaggatgtctttccgctaggagaggcagct
atttgccgttctgagggcgattggctagtgggcattaacggaacacgtgcaatgacagtc
tttaactccggatctgggaggtttcgacttacaccagtagggcgtgtacaaacacctacg
cttagcattctggtagagcgagaggaaaaaatccactcctttacaccgcgtgcctatttt
gaaatcctggccaatttcagttgtaaagaggaagaatactggggacgatggttcgatccc
ctctttcaaagaggcggcgatgaagacgatcgcgcagagagactgtgggacagaaaaaag
gcggaggctattcaggctaagtgtcaaggcggacaaggaattgcagttgaggaaaaaaag
gaatcttcgcaaagtgctcccctactctatgatctcacctcccttcaaaaagaagcaaat
atccgccattctcttagtgcgcgtagaacgcttcaaattgtgcagacactttacgagcgc
cataaggctttgacttacccaaggacagattctaggtacttgccggaagactatcttcca
gtcgtacgttccgctttagagtctatcaaggaaggaaagttacacgtttatgctaaaaaa
gcgttggcccaagattgggtcaaaccaattaagcgtgtctttgataatgcaaaagtgacc
gaccaccacgctattatccctactggggtaacacctagaaatttagacgagatggaaaca
agagtttatgacatgattagacgtcggttggttgcagctttttatcctgctgcccagttc
caattaactactcgtactaccaccgtggaaggggaaagttttcagagcgaaggaaaaacc
cccatcgatttgggatggctttctgtctatggcaaacagctccctagccaggaagtgctt
gcgccgatacatgcaggaacgcttttagctacgaaaatggaagtggttgaacaccaaacc
aaaccgccagctcgttattcggaagccacattgctctccgccatggaaggcgccggaaaa
ttgcttgaggaagaggcattacgagaggccatgcatcaacgtggtttgggaactcctgct
acacgagcacagattattgaaggattggtgactgatggctacgtaacgcgccagggacgc
aggctgatagctactgctaaaggtataatgctgatgaccttattacgcgatattggaatc
caggacctatgtttcccagaacttacaggagaatgggagtataagctcaaacgcatagaa
gcggaccaatttgatcgtgacgccttcatgggggagatacgccgatttgcagaaaaaatt
gtggagaagacgagaagattttttgaactttcttcgaaaaaaaactgtcaagatctagaa
gctcgatgccccaaatgccacgctacgagtttttcggaatcctttcacacttacgagtgc
aaaagctgcgggcttttgttctggaaaaacgttgctggaagacaattcactcctgaagaa
atccgtggcctacttgaaacaggatccattggtcccctggagggatttcgcagcaaaaat
gggaattccttcgtagctaaaatcaagctagataacgccttcaaggtaagttttgatttt
ggagattcctattcggaaatggaaagaaaacaggcaatcctctcctcaacctctatcgtt
ggttcttgcccagtttgccatgaggggaaggtttatgacactggattttcctattgctgt
aataggatgctcgcaaaagagtgcaccctaaacatcgggaaggtcatcctgcagaaggaa
attccacaagatcaaatgatcaaagtcctacagaccggcaagaccgaccttatttctcaa
tttgtctctaggaaaggccgtcgtttttctgcctacctcatcctaaaaaatgggaaagtg
aagttcgagttcctggaacgccagagggatgcctag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (35)   

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