KEGG   Xenopus laevis (African clawed frog): 108698385
Entry
108698385         CDS       T01010                                 
Symbol
thoc2.L
Name
(RefSeq) THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03013  Nucleocytoplasmic transport
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108698385 (thoc2.L)
  09122 Translation
   03013 Nucleocytoplasmic transport
    108698385 (thoc2.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    108698385 (thoc2.L)
   03041 Spliceosome [BR:xla03041]
    108698385 (thoc2.L)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     108698385 (thoc2.L)
Spliceosome [BR:xla03041]
 Complex C
  Other components
   EJC/TREX
    108698385 (thoc2.L)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108698385 (thoc2.L)
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 108698385
NCBI-ProteinID: XP_018085308
Xenbase: XB-GENE-17346865
UniProt: A0A1L8F7C4 A0A974H776
Position
8L:complement(39960787..40038876)
AA seq 1588 aa
MAATLLPADWIKNWEKSGKNDFLQLCRSLSEKGQEFVTFTEIQQVLYEFACQVVKGNLKY
DQVAGVFAEIIALRDDMPSILADVFCILDVETSCLEEKWRRDHFTQLVSSCLYLVSDTIL
KERLDPDTLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGSITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPDHDDFFAPLIESYMCMCEPQT
LCHILGFKFKFYQEPSGETPSSLYRVAAVLLQNNLIELEDLYVHLLPAESSIIEEYKKEV
IEAKQIVRKLTMVVLSSDKGEEKEKEKDEEKTEKPPDNQKLGLLESLLRIGDWQHAQSIM
DQMPPYYAASHKPIAVALCDLIHKTIEPLYRRMGVPKGAKGSRIVPLQSKRAPKQAESFE
DLRRDAFTMLCYLGPHLSHDPILLAKVVRLGKALMKESQSETNAEEKERMEVLFSCLLSV
TDQVLLPAITLLDGNACMSEELWGMFKCFPYQYRYRLYGQWKNETYNSHPLLVKVKAQTI
DRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASFCGAIFRKYPIELGGLLQYVAN
QLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAVTGGEQLKAEGGYFGQIRNTKKSS
QRLKDSLLEYELALPLCLLMAQQRNGVVFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLAS
NLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKAEKGNKQQHKV
HKYITSCELVMSPVHEAVISLHPPKVWEDISPQFYSTFWSLTMYDLSVPSNSYSREINKL
KSQMRAIDENMDMPPNKKKKEKERCTALQEKLVEEEKKQSEHVARVLQRMKLEKDNWLLA
RSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHLQKTPNFSTLLCYDRVFSDIIY
TVASCTENEASRYGRFLCCMLETVTKWHSDRNVYDKDCGSYPGFVTILRAASFDSGNKAD
QLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALER
RVHKICQDEKEKRPDLYALAMGYSGQLKSRKNFMVPENDFHHKDPPVRSSVPPPVQNGPG
TVSQSASMLVNAAKPEEGTTEETDKLKEKAQSALKVVTKAASTAPKVTASNGNSTSASKV
LKEKEDKDKTGKEKEKDKREKTPVAPLETKAPGKEAKEKVKEDRPNKDEKLRDVKEKTPK
ADKEKEKAKKEEKSQKEEKSKAIMMSNESKISSDKERERELSREKEALKEAKTKESSKSA
EKSAVSGSLKSPVPRTDMPETEREQKRRKIDTHSSPSHSSAVKDNLSEFKDSSTKHYTNH
TTPTISKNKEKEVEKKELEKSRERSREREKKEEKERKEKKRDHSNGDRELMQESKRRKEE
NGTGSSSKHSKSESPSDSPRSNEKERNKSKSSSKEKGDFMKSEKMEKSSSGSKKESRHDK
EKSEKKEKRESTGGKEEKKHHKSSDKHR
NT seq 4767 nt   +upstreamnt  +downstreamnt
atggcggccacgttactacccgctgattggataaagaactgggaaaaatcaggaaaaaac
gacttcttgcaactatgccgcagcctcagtgaaaaaggccaggaattcgttacattcaca
gaaattcagcaggtcctgtatgaatttgcatgtcaagttgttaaaggaaatttgaagtac
gatcaagttgctggcgtttttgctgaaataatagccctcagagatgacatgccctcaatc
ttagcagatgtattttgtattttggatgtagaaacaagctgtttggaagaaaaatggaga
agagaccattttacccaactagtatcatcctgtttgtatttagtctcagacacgattctg
aaagagcgcctagatccagacacgctggaatccctggggcttatcaaacagtcacaacag
ttcaaccagaaatctgtgaaaataaagaccaaacttttttataagcaacagaaatttaat
ttattacgtgaagaaaatgaaggctatgcaaagctgatcacagaacttggacaagatctt
tcgggaagcataaccagtgatttaattcttgaaaatattaagtctttaatcggttgcttt
aacctggaccccaacagagtgctggatatcattttagaagtgtacgaatgtcgaccagac
catgatgatttttttgcgccattgattgaatcatacatgtgcatgtgtgaacctcaaaca
ctgtgtcatatccttgggtttaaattcaagttttatcaggagcccagtggagaaacccct
tcttctttgtacagagtagcggctgtgcttttgcaaaacaatctcattgaactagaggat
ctttatgtgcatcttcttccagcagagagtagcattattgaggagtacaagaaggaagtg
atagaggccaagcagattgtcagaaaacttaccatggtggtcttgtcctctgataaaggc
gaagaaaaggaaaaagaaaaggatgaagagaagacagaaaagcctcctgacaaccaaaag
ctaggcttgttggaatccctactgaggattggcgactggcaacatgcgcaaagtattatg
gatcagatgcctccatattatgctgcttcacacaaaccaattgccgtggctctgtgtgat
ctaattcataaaactattgaaccgctttatcgaagaatgggggtacccaaaggtgccaaa
ggatctcgtattgttcccttacaaagcaagagagccccaaagcaagcagaatcatttgaa
gacttacggagagatgccttcactatgctttgctacctgggcccacatctttctcatgac
cctatattgcttgcgaaagtagttaggcttggaaaagcattaatgaaagagtcacagtct
gagacgaacgcagaagaaaaagaaaggatggaggttttattcagttgcttgctcagcgtt
acagaccaagtgttactacctgctattactttattggatggcaacgcctgtatgtcggaa
gaactttggggaatgttcaaatgctttccttaccaatacagatatcgtctgtatggtcag
tggaagaatgaaacatacaacagccacccgttgctggtcaaagttaaggcacaaacaatt
gacagagccaagtacatcatgaaacgtctgacaaaagaaaacgtcaagccatcaggaaga
caaataggaaaactaagccatagcaatccaaccattctgtttgattatattctttcgcag
atccaaaagtatgacaacctcatcacaccagttgttgattcgctgaaatacctaacttca
ctaaattatgatgtcctggcttactgcataatagaagctcttgctaatccagaaaaagag
aagatgaagcatgatgacaccactatttctagctggttgcagagtttagctagcttttgc
ggagcaattttccgaaaatatcctatagaactaggtggtcttctgcagtatgtggctaat
cagttgaaagctggcaaaagctttgatttactgattttgaaagaggtagtgcaaaagatg
gctggaatcgaaatcactgaggaaatgacaatggaacaactagaggcagtgactggtgga
gagcagctaaaagctgagggtggttattttggacaaataagaaacacaaagaaatcatct
cagagattaaaagattccttgctggagtatgaattggctcttcctttgtgtctgcttatg
gcccagcagaggaacggcgtagtattccaagaggggggagagaaacacttaaagctggtg
ggaaaactgtatgatcagtgtcatgatactctggtgcagtttggaggatttttggcttcc
aatttgagcacagaagattatatcaaaagagttccatccattgatgttctttgcaatgaa
ttccacacacctcatgatgctgctttcttcttatccaggcctatgtatgctcatcacatt
tcatctaaatatgatgagcttaaaaaggcagagaaaggaaacaagcagcagcacaaagtg
cacaagtatatcacatcgtgcgaactggtcatgtctcctgtgcatgaagccgtgatatct
ttgcacccacctaaagtgtgggaagacatcagccctcagttttactccaccttctggtcc
ctgaccatgtacgacctctctgtcccaagcaacagctacagcagagaaatcaacaaactg
aaaagccagatgagagccatagatgaaaacatggatatgcccccaaacaaaaagaaaaaa
gaaaaggagagatgcactgccctgcaagagaagcttgtggaggaggagaagaaacagtct
gaacacgtggctcgagttctacagaggatgaagctagaaaaagataactggcttttagcc
cgatccacaaaaaatgagacaatcaccaaatttttgcagctttgtatatttcctcgctgt
attttctcagccattgacgctgtgtactgcgctcggtttgtagaacttgttcaccttcag
aaaacaccaaacttttctaccctgctctgttatgatagagttttctcagacatcatttac
acggtggcaagttgtacagagaacgaggctagccgatatgggagatttctgtgctgtatg
ctggagaccgtaacaaaatggcatagtgatagaaatgtgtatgacaaggattgcggcagt
tatccaggctttgtaacaatactaagggcagccagctttgatagcggcaacaaagctgac
cagctggattatgagaatttccgtcatgtggtgcacaaatggcattataaattgacgaag
gcgtctgtccattgccttgagacaggggaatacacccacatcaggaatatccttattgtg
ctgactaagatcctgccatggtatcctaaggttctgaacttgggccaagctctggagcgc
agagtccacaaaatatgccaagatgagaaggaaaaaaggcctgatctctatgcgttggct
atgggctactctgggcagttgaaaagcaggaaaaatttcatggtgcctgaaaatgatttc
catcacaaagatccccctgtaaggagctccgtgccacccccagtacaaaatggaccaggc
actgttagccagtctgcttccatgttggtgaatgcagctaaaccagaagaaggcactact
gaggaaaccgacaaactcaaggaaaaagctcagagtgctctgaaagttgttactaaagct
gccagcacagcaccaaaggtgactgcaagcaatgggaacagcacttctgctagcaaagtg
cttaaagaaaaagaagacaaagataaaactgggaaagaaaaagagaaagacaaacgagag
aaaacaccagttgcacctcttgagaccaaggcaccaggaaaggaggcgaaagaaaaagta
aaggaagaccgtccgaataaagatgaaaagctgcgtgatgtcaaggagaagactcctaaa
gctgacaaagaaaaggagaaggccaagaaggaagaaaaatctcagaaggaagaaaaatct
aaggcaattatgatgagcaacgagtccaaaatctcttcagataaagagagagagagggag
ctctccagagagaaagaggcattgaaagaagcaaaaaccaaggagagttccaaatccgca
gagaaatcggctgtttctgggtccttgaagtctcctgttccccgtacagacatgcctgaa
actgagagggaacaaaaacgacgcaaaattgatacacattcttctccatcgcattcctca
gcagtaaaggacaacctcagtgaatttaaggactcttcaaccaagcactacacaaaccac
actaccccaacaatatccaaaaataaggagaaagaagtggagaagaaagagctggagaaa
tcacgagagaggtcgcgcgaaagagagaagaaagaggaaaaagaacggaaggaaaagaag
agggatcactcaaatggcgaccgtgaattgatgcaggaatcaaagcgccgcaaagaagaa
aacggaaccggcagttcctcgaaacacagtaagagcgaaagtccttctgactcccctcga
tccaatgagaaagagcgcaataaatcaaaatcatcaagtaaagagaaaggggatttcatg
aaatcagaaaaaatggaaaaaagcagttctggcagcaagaaggaatccagacatgacaag
gaaaagtctgagaaaaaagaaaaacgtgagagcacaggaggaaaggaggagaaaaagcac
cataaatcttcagacaagcacagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (55)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (68)   

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