KEGG   Xenopus laevis (African clawed frog): 394290
Entry
394290            CDS       T01010                                 
Symbol
cdh3.S, b-cadherin, cadherin-1, cdh1-a, cdh3, cdh3-a, cdh3-b, cdhc-A, cdhp, E-Cad, E-cadherin, hjmd, l-cam, lcam, P-cadherin, pcad, U-cadherin, uvo, uvomorulin, xb-cad, XB-cadherin, XBcad, xcdh1, XTC~
Name
(RefSeq) EP-cadherin precursor
  KO
K05689  cadherin 1, type 1, E-cadherin
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04371  Apelin signaling pathway
xla04514  Cell adhesion molecules
xla04520  Adherens junction
Brite
KEGG Orthology (KO) [BR:xla00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04371 Apelin signaling pathway
    394290 (cdh3.S)
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    394290 (cdh3.S)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04520 Adherens junction
    394290 (cdh3.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xla03036]
    394290 (cdh3.S)
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:xla04515]
    394290 (cdh3.S)
   04090 CD molecules [BR:xla04090]
    394290 (cdh3.S)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Centrosome formation proteins
   Other centriole associated proteins
    394290 (cdh3.S)
Cell adhesion molecules [BR:xla04515]
 Cadherins
  Major cadherins
   394290 (cdh3.S)
CD molecules [BR:xla04090]
 Proteins
  394290 (cdh3.S)
SSDB
Motif
Pfam: Cadherin CADH_Y-type_LIR Cadherin_pro He_PIG Big_9 BACON_2
Other DBs
NCBI-GeneID: 394290
NCBI-ProteinID: NP_001080946
Xenbase: XB-GENE-6254663
UniProt: P33148
Structure
Position
4S:complement(43337930..43368179)
AA seq 895 aa
MRLLFGTVAVHKRAHMGSTRLRNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFS
VNRRELERGRKLGKVNFSDCTTRKHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTIS
TWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVS
ENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREE
YDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAV
SATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLT
VQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMP
GTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSV
PLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYF
IGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHV
LDVNDNGPVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSK
GTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIKCQEKLVGGFDLP
IILVILGSVLALLILFLLLLLFLKRKKVVKEPLLLPEDDTRDNIFYYGEEGGGEEDQDYD
LSQLHRGLDSRPDIMRNDVVPTLMPAPHYRPRPSNPDEIGNFIDENLDAADNDPTAPPYD
SLLVFDYEGSGSEAASLSSLNSSNSNDEHDYNYLSDWGSRFRKLADMYGGDDDEE
NT seq 2688 nt   +upstreamnt  +downstreamnt
atgaggcttctgttcgggacggtggctgtgcacaagcgggcgcacatggggagcaccagg
cttagaaacgcgagcgtgtggctttgcggactgctttgcttgttacaggttgtgccttcc
ataaatgcagatgtttctggatgcaagcctggattttcttctgccgaatacattttttct
gtgaaccgtagggagctggagaggggcagaaagctaggcaaagtgaactttagcgactgc
acaacccggaaacatggtttatatgacgtgggagactctcgattcagggtgctgccagat
ggcactgttctagtaaaacgccatgtgaaactgcacaaggacaccaaatttacaatcagt
acgtgggatgcacgtggcattaagcactctactaatattgctgttgcaagcaaacgccat
cgatctggagaggaagctcattcaagatcttcaaagctaccagtgctgacatttccagag
acgcacacaggcctcaaaaggaagaagagagactgggtcatccctcctataaaggtttct
gagaatgaacgtggccctttccccaaacgtctcgtgcagatcaaatccaacaaagaccgg
tttaataaggtttactacagtattactgggcaaggggccgacaaccctcctcaaggagtt
tttcgtatagagtgggagaccggatggatgctagttactcggcctttggatcgtgaagag
tatgataaatatgtgctgtcttctcatgccgtttctgagaatggttctcctgtggaggaa
ccgatggaaataaccatcaatgtgattgatcagaatgataaccgtcccaaattcacacaa
gatgtgttcagaggatctgtcagggagggtgtgcagccaggcacccaggtgatggctgta
tctgcaacagatgaagatgacaatatagacagcctgaacggtgtcctttcctattccatt
ctgaagcaggatcctgaagaaccaattcctaacttgtttaccataaaccgtgaaaccgga
gtgattagcttgattgggacaggtttggacagagagaaatttccagaatatacccttact
gtccaagctacagatctggaaggcgcaggactctccgtagaggggaaagctattattcag
atcactgatgcaaacgacaatgctccaatttttgatccaaaaacttatacagcactggtc
ccagagaatgaaattggttttgaagttcagagactgtctgttacagacttggatatgcct
ggtacncctgcatggcaggcagtctacaagataagggttaacgaaggaggtttttttaat
attacaacagatcccgagtctaatcaaggaatactaacaactgctaagggtctggatttt
gaactgaggaaacagtacgtgcttcaaatcactgtagagaatgctgaacctttctctgtt
ccactaccaacctcgactgctacagttactgtgactgtggaggatgtgaatgaagccccc
ttctttgtaccagctgtcagtagagttgatgtatctgaagacctttcacgtggagagaaa
attatttcacttgtagcgcaggaccctgataagcaacagatacaaaaattaagctacttc
attggcaatgacccagctcgctggcttacagtaaataaggacaatggcattgtcactgga
aatggcaacttggatcgtgagtcagagtatgtcaagaacaatacatatacagtcatcatg
ctggtgacagacgatggtgtttcagttggcactggcaccgggacgctcattctacatgtg
ctggatgtaaatgacaatggtcctgtccccagccctcgagtcttcaccatgtgtgatcaa
aatccagagccccaagtattaacaatcagtgatgctgacatccctccaaacacctaccca
tacaaagtttcactttcacatggctctgatttaacatggaaggctgaacttgacagcaaa
ggaacatcaatgcttctaagtccaacacagcagctgaagaaaggagactacagcatttat
gtgcttctgtctgatgcacaaaataatccgcagctgactgtggtgaatgcaactgtatgc
agctgtgagggaaaagcaataaaatgccaggaaaagcttgtcggtggttttgatctgcca
attatccttgtgatcttgggttcagtcttggctctgttgatactattcttgctgctgctc
ctgtttctgaagagaaagaaggttgtgaaggagcctctacttttgccagaggatgatacc
agggataatatattttattatggagaggaaggtggaggagaggaggatcaggattatgac
ttgagccagctgcacagaggcctagattctcgtccagacataatgagaaacgatgtggtt
cccaccttgatgcctgccccacattacagacctcgtccttcaaacccagatgaaattggt
aacttcattgatgagaacttggatgcagctgacaatgaccccactgctcccccatatgac
tctcttttagtgttcgattatgaaggcagtggctctgaagctgcatcgctcagctccctg
aactcttccaactcgaatgatgaacatgattacaactatttgagtgattggggctcccgc
ttcagaaagttagcagatatgtatggtggagatgatgatgaagagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
3D Structure (1)   
   PDB (1)   
Protein domain (6)   
   Pfam (6)   
All databases (42)   

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