KEGG T01010: 394389

Xenopus laevis (African clawed frog): 394389

Entry

394389 CDS T01010

Gene name

lig4, lig4-A

Definition

ligase IV, DNA, ATP-dependent (EC:6.5.1.1)

Orthology

K10777

DNA ligase 4 [EC:6.5.1.1]

Organism

xla Xenopus laevis (African clawed frog)

Pathway

xla03450

Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:xla03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV DNA_ligase_A_C BRCT mRNA_cap_enzyme Ribosomal_S5_C

Other DBs

NCBI-GI:

NCBI-GeneID:

Xenbase:

UniProt:

AA seq 911 aa
MSTPKASDSAAEHTVASQVPFADLCCTLEKIQKCKNRTEKSHIFKQFVDSWRKFHDALHK
NRPKTTDSFYPAMRLVLPQLERERMAYGIKETMLAKLYIKVLGLPKEGKDALKLLNYRTP
TSSHSDAGDFAAIAYFVLKSRCRKEGNLSIQEVNYHLDSIANNNAAKKKELIEKSLLHLI
ANTTALEQKWLIRMIIKDMKLGFSQQTIFSIFHPDAVELHNVTTDLEKVCIQLHDPDVCL
SDVSISMFSAFKPMLAAVANIQNIEKQMNHQSFFIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPYVHNAFRLDTQNCILDGEMMAYNPNTQTFMQKGNKFDIKHMV
EDSELQTCYCVFDILLLNDEKLAHETLRKRYDILKEIFIPIPGRFHIVDKTEASTKKNVV
DALNEAIDKREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIIGGYWGKGS
RGGMMSHFLCGVAEASGPGEKPSVFHSICRVGSGYTMKELFDLGLKLAPHWKTYRKRDPP
SNILCGIEKPEVFIQPCNSVILQIKAAEIVSSDMYKTGCTLRFPRIEKIREDKEWYECMT
LDDLEQFRDKASGKLASKHLDVDDEPHEKKRKTAPKLKKVIGIVSHLKAPDLSNVHQESS
MFTEVEFCVMSGTDQHSKADLENIIAKCGGIVVQNPGADTYCVIAGIENVRVKNVICSNK
HDVVRAAWLLECFENKTVVPWQPHHMIHMCPSTAEHFACEYDCYGDSYVTDTSEYPLRDV
FHRMSKIKEKIPFEMMANLEERYSWNNSSYNIFRHCTVYVDSFATINDPTTRINTSSLNI
RALELRFHGAKLVNQLDEGISHVLVSEDLSRLEQIKTMRRAMAKKFKIVSVSWVLDSVKM
RVPQMENAYLL

NT seq 2736 nt +upstreamnt +downstreamnt
atgtcgacgccgaaagcctcagattctgcagccgaacatactgtggcctcacaagtgcct
tttgctgatctctgttgtactcttgaaaaaattcaaaaatgcaaaaacagaactgagaaa
agtcatatttttaaacagtttgttgattcctggagaaaatttcatgatgccctccataaa
aatcggccaaaaacaaccgattctttctatccagccatgcgtcttgttcttccacaactt
gaaagagagagaatggcttatggaatcaaagaaaccatgcttgcgaaattgtacattaaa
gttttaggcttacctaaagaaggcaaagatgcattaaagcttttgaattatagaacgcca
actagttcacatagtgatgcaggggattttgctgccattgcttattttgttctcaagtca
cgatgcagaaaagaggggaacttgtcgatacaagaagtaaattaccatttagattcaatt
gctaataataatgcagcaaaaaagaaggaactcatagaaaaaagtttactgcatttaatt
gctaacacaactgctcttgaacaaaagtggcttatcagaatgattattaaggacatgaaa
cttggttttagccagcaaactattttctccatcttccaccctgatgcagtagaactgcat
aatgttaccactgatcttgagaaagtttgtattcagctccatgatcctgatgtctgtctc
agtgatgtttctatatcaatgttctctgcttttaaaccaatgctggctgcggtcgccaac
attcagaatattgaaaaacaaatgaaccaccaaagttttttcattgaaacgaaactggac
ggagaacggatgcagatgcacaaagatggggatgtgtataaatatttctcacggaatgga
tttgattacacacagcagttcggtgcatctcctcttgaaggctctttgaccccatatgtt
cacaatgcttttagactggacacccaaaattgcattctagatggagaaatgatggcctac
aatccaaatactcagactttcatgcaaaaaggaaacaagtttgatattaaacacatggta
gaagattctgaattgcaaacttgctactgtgtttttgacatactgctgcttaatgatgaa
aaattagcacatgaaacactcagaaaaagatatgacattctgaaagagatttttatccca
ataccaggcagattccatattgttgataaaactgaagcaagcacaaaaaagaatgttgtg
gatgcacttaatgaagcaattgataaaagggaagaaggcattatggttaaagatccaatg
tctatctacaaaccagacaaacgtggggaaggatggctgaagattaaacctgaatatgtt
aatggtttaatggatgagctagacttattaatcattggaggctactggggaaaaggttcc
cgtggtggaatgatgtcccatttcttatgtggtgttgctgaagcttcaggtcctggggaa
aaaccatctgtttttcactcaatttgtcgtgttggctctggttacaccatgaaagaatta
tttgatcttggtttaaagttggctcctcactggaaaacatatcggaagagagaccctccc
agcaatattctttgtggaatagagaaacctgaagtgtttattcaaccttgtaattctgtc
attctgcaaattaaagcagcagaaattgtttccagtgatatgtacaaaacgggttgcact
ctgagattccctcgcattgaaaaaataagggaagataaggaatggtatgagtgcatgaca
cttgatgacctggaacagtttagagacaaagcatcggggaaactggcttcaaaacactta
gatgttgatgatgaaccacatgaaaagaaaagaaaaactgcacccaagcttaagaaagtt
attggaattgtttcacacctaaaagcacctgaccttagtaatgtacatcaggagtcttct
atgtttacagaggtggagttctgtgttatgagtggaacagaccaacattctaaagctgat
ctagagaacattattgctaaatgtggtggtattgtggtacagaatcctggagcagataca
tattgcgttattgcaggaatcgagaatgtgagagtgaaaaacgttatctgctcaaataag
catgatgttgttagagcagcttggctattggaatgttttgaaaataaaactgttgtgccc
tggcagcctcaccacatgatacacatgtgcccatcgactgcagaacattttgcttgtgaa
tacgactgctatggtgatagctatgtcacagatacaagtgaatatccattaagagacgtt
tttcacagaatgtctaaaataaaggaaaaaatcccctttgaaatgatggctaatttagaa
gagagatactcatggaataacagttcttataatatctttcgtcattgcacagtatacgtt
gatagttttgccaccattaatgacccaaccacaagaatcaatacatccagcctaaatata
agagcactggagctacggtttcatggtgccaagttagtaaaccagcttgatgaaggaatt
tcgcatgttctcgttagtgaagatttgtcccgtctagagcaaattaaaactatgaggagg
gccatggcaaaaaaattcaaaattgtctctgtttcatgggtacttgattcagtaaaaatg
agagtgcctcagatggaaaatgcctatttgctataa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (3)   
   UniGene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (7)   
   Pfam (7)   
All databases (25)   

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