KEGG   Xenopus laevis (African clawed frog): 397727
Entry
397727            CDS       T01010                                 
Symbol
sox13.S, sox12, sox13, sox13.L, Sry, xSox12, xsox13
Name
(RefSeq) transcription factor Sox-13
  KO
K09269  transcription factor SOX5/6/13 (SOX group D)
Organism
xla  Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:xla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:xla03000]
    397727 (sox13.S)
Transcription factors [BR:xla03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    397727 (sox13.S)
SSDB
Motif
Pfam: HMG_box HMG_box_2
Other DBs
NCBI-GeneID: 397727
NCBI-ProteinID: NP_001081238
Xenbase: XB-GENE-865496
UniProt: P40649
Position
2S:complement(58437740..58528123)
AA seq 567 aa
MDTIQGELVYCPANEQECRISAKIPISPSEDTGGPCLKVEEDYEEVSLQTGIVPVFIKQD
YESSSQDANDLCKPQGDAPASDRKEENLKLSKTVSDAMPALEKFLSNDWKEILLGNSTVG
SKDFKGTKESLAEKELQLLLMIHQLTGLRDQLLSAHSEHRNLAAMLFEKQQQQMDLARQQ
QEQIAKQQQQLIQQQHKINMLQQQIQQVNMPYVMIPAFPSAQTVSAEPQMSLPIQPIPCK
PVEYPMPLLHNSHAGRGSASAKHQETSQPLNLTAKPKCPDQFPNSSSSPEFRMSPVGSQC
GGTMDSASSSQKANLPLGFLGEGDAITKAIQEACQLLHGQNTSPEHCQQNYRKELLDTLP
EKNIQDVTSLHHTEASLLRCSMDIDGSRGNHIKRPMNAFMVWAKDERRKILQAFPDMHNS
SISKILGSRWKSMSNGEKQPYYEEQARLSRQHLERYPDYKYKPRPKRTCIVEGKRLRVGE
YKALMKNRRQDTRSLGSLQCPPSPSGFSSQSLLGNLSQSPQECNIQVVTSQCLMSHELHG
AIHMAKDICSDSEDSVKSDGELVVITD
NT seq 1704 nt   +upstreamnt  +downstreamnt
atggataccatacagggtgagctggtatactgtcctgcaaacgagcaggaatgcagaata
tctgcaaagataccaatctctccaagtgaagacacaggagggccctgccttaaagtggag
gaagattatgaggaggtttctttacaaactggcattgtcccggtgttcatcaaacaggat
tatgaatcttcttctcaggatgctaatgacttgtgcaaacctcagggtgacgcccctgcg
tctgacagaaaagaggaaaatctgaagctaagcaaaacagtgagtgatgctatgcctgct
ctagagaagtttctatctaacgactggaaggaaatacttctaggaaattcgactgtagga
agcaaagatttcaagggtactaaggaaagcttggctgagaaggagctgcagttgctgctt
atgattcaccaactgacaggactgagagatcaattgctcagtgcacattctgagcacaga
aatttggcagccatgttgtttgaaaaacagcagcagcagatggatttggcaaggcaacag
caggagcagatagcaaaacagcaacaacaattgatccagcaacagcacaagatcaatatg
ttgcagcagcagattcagcaggtgaacatgccttatgtgatgattcctgcatttccctct
gctcagactgtttcagcagaaccccagatgtcacttcctatccaacctattccatgcaag
cctgtagaataccccatgccacttcttcacaactcccatgcaggaagaggctctgcatct
gccaaacaccaggaaacatcccagcctttaaatttaacagccaaacccaaatgtcctgac
cagtttcccaactccagcagttctcctgaattcagaatgtccccagtgggcagccaatgt
ggaggtaccatggattctgcatctagctcccagaaagcaaatttaccactgggttttcta
ggagaaggggatgccataactaaagcaattcaggaagcatgtcagttgcttcatgggcag
aacacatctccagaacattgtcaacaaaattacaggaaggagcttttggataccctgcca
gagaagaatatccaggatgtgacttctctacatcacacagaagcatctcttttaagatgc
agcatggatatagatggatcccgtggtaatcacattaaacgtccaatgaatgcgtttatg
gtgtgggcaaaagatgagaggaggaagatcttgcaagcatttcctgacatgcataattct
agcatcagtaagattctagggtctcgttggaaatctatgagtaacggcgagaagcagccc
tattatgaggagcaagcaaggcttagtcgccaacacttggagagatatccagactataag
tacaagccgcgccccaagcgcacatgcattgttgagggaaagagactacgtgttggagag
tacaaagctctcatgaagaaccgcaggcaagatacaaggtctctaggatctctacaatgt
cccccttcaccatctggattctcttcacagtctttgctgggcaatctgtcacagtctcca
caggaatgtaatattcaagtggttaccagtcagtgtctgatgtcacatgaactccatggg
gctatccatatggccaaagatatctgtagcgactctgaagattctgtaaagagtgatggg
gaactggtggtgataacagactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (28)   

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