KEGG T01010: 398275

Xenopus laevis (African clawed frog): 398275

Entry

398275 CDS T01010

Gene name

lig3

Definition

ligase III, DNA, ATP-dependent (EC:6.5.1.1)

Orthology

K10776

DNA ligase 3 [EC:6.5.1.1]

Organism

xla Xenopus laevis (African clawed frog)

Pathway

xla03410

Base excision repair

Module

xla_M00296

BER complex

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:xla03410]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N zf-PARP DNA_ligase_A_C mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

Xenbase:

UniProt:

AA seq 988 aa
MKAVLKLLSYQTIRTFGQLFTKVPLQVTVLARWSPSPLRSALRFQFFLGVTNYSNMAEQR
YCVEYAKRGTAGCKKCKEKIGKGLVRIGKIVPNPFSESAGDMKEWYHIKCMFEKLERARA
TTKKIDDLTDLEGWQELQDCDKELINQHVTELATKTAATPRKKTPSKGNQSMAAQGTTPT
KAPATSPSPLKFSGYSAKPSQSPSPPSSGTGSSLSTAKCDPKHKDCLLREFRKLCAMVAE
QPSYNSKTQIIRDFLTKGTSGDGFHGDTYLTVKLLLPGVIKSVYNLNDKQIVKHFSRIFN
CNQEEMVRDLEQGDVSETVRIFFEESKSFPPASKSLLTIHEVDDLLTRLSKMTKEEDQQN
VLEDIARRCTSNDLKCIIRLVKHDLKMNSGAKHVLDALDPNAYDAFKASRNLGDVVERVL
RNEQQAPGMKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHK
NGDHFSYFSRSLKPVLPHKVAHFKDFIPKAFPGGNSMILDAEVLLIDTNTGKPLPFGTLG
VHKKAAFKDASVCLFVFDCIYFNGVSLMDRPLNERRKFMRENMVEIPNHIMFSEMKHVTK
AADLADMITRVIREGLEGLVLKDIKSNYEPGKRHWLKVKKDYLNEGAMADTADLAVLGAY
YGKGANGGIMSIFLMGCYDPEGQLWCTVTKCSSGYDDATLQRLQKELNMVKISKDPSKIP
SWLKINKNYFPDFIIQDPKKAPIWEITGAEYSKAEAHTAGGLSIRFPRCTRFRDDKDWKT
ATTLQQLKELYRLSKEKSDFNITATSSQDEDGSSECSSRENEGNSTQTSSGSLVKTIKNV
PSKSPAKGKTSESSKLPPQKKKEEPMKAEKRKSHTPTTVQSKKAKISETGHSNGHRIAQS
TAANKTLLDIFTGVKLHIPSTLDDFAKLRRYFIAFDGDLVPEYDLPTATHVMGDAPDSDT
DAKHVTPHWIWACIRRRRLVSCVDENCV

NT seq 2967 nt +upstreamnt +downstreamnt
atgaaagcagttctgaaactattgtcatatcagacaataaggacctttggacagttattt
acaaaagttcctttacaagttactgttcttgcccgttggagcccgtcgcctctccgcagt
gctttgcgctttcaattctttttaggagtcacaaattactcaaacatggcagaacagcga
tactgtgtggagtacgcaaaacgtgggactgctggctgtaagaaatgcaaggagaagatt
ggaaaaggtttggtacgcataggcaaaatagttccaaaccctttcagtgagtctgctggc
gacatgaaggagtggtatcacattaagtgcatgtttgagaaactggagagagcacgggca
actacaaagaaaattgatgatctgactgatctggaaggttggcaggaacttcaagactgt
gataaagagctaatcaaccagcatgtcactgaacttgctacaaaaacagcagctacacct
cgaaaaaagaccccatccaagggaaaccaatctatggcggcacaaggaacaactcccact
aaggcaccagcaaccagtccttctcctctaaaattttcgggatactcagcaaaacccagt
caatctccaagcccaccaagctcaggcactggctccagtctttccactgcaaagtgtgac
cctaaacataaggactgccttctgcgtgagttccgcaagctttgtgcaatggttgcggaa
cagccaagctacaattccaaaacacagatcattcgtgatttcctaactaagggaacaagt
ggagatggatttcatggtgacacatatctgacagtaaagctgctattaccaggtgttatt
aagtcagtgtacaacctcaatgataagcagattgttaaacatttcagtcgtatttttaat
tgtaaccaagaggagatggtacgggacctagagcagggagatgtctctgaaactgtgcgc
atcttctttgaggaaagtaaaagctttccacctgcgtctaagagtctactgacaatccat
gaggttgatgatttgcttactagactttcaaaaatgactaaagaagaagatcaacagaat
gtcctggaggacattgctcgcaggtgtaccagtaatgatcttaaatgcataattcgcctg
gttaagcatgacttgaaaatgaactctggagccaaacacgtgctggatgctctagatcct
aatgcatatgatgcatttaaagcttcacgcaatctaggggatgtagtagagcgtgtttta
cgcaatgaacagcaggctccaggaatgaaacgaactcttagtgtccaggcttcattaatg
actccagttcagcctatgcttgctgaagcttgcaaatctatagagtatgccatgaagaag
tgtcccaatggtatgtatgctgaaataaaatatgatggtgaaagagtccaagtacataag
aatggagatcacttcagctacttcagtcgcagtctcaagccagtgcttcctcataaggtt
gctcattttaaggattttatacccaaagcatttccaggaggaaacagtatgattctggac
gcagaagttcttcttatcgataccaatacgggcaagccactaccatttggcactttaggt
gttcataagaaagctgctttcaaagatgccagtgtgtgcttgtttgtttttgattgcatt
tatttcaacggagtgagcttaatggatcggccacttaacgagcgacgaaagtttatgcgt
gaaaacatggttgaaatcccaaatcacattatgttctctgagatgaaacatgtcacaaaa
gctgctgatctggctgacatgatcacccgtgttatccgagagggattggagggtctggta
ttaaaagatataaagagtaattatgagccaggaaaacgccattggctcaaagtcaagaag
gattacttaaatgaaggtgcaatggcagacacagctgacctggcagttttgggcgcttat
tatggaaagggagcaaatggtggtataatgtccatctttctcatgggttgctatgatcct
gaaggccagctttggtgcactgtgacaaaatgctcaagtggttatgatgatgctaccttg
caacgccttcagaaggagctgaacatggttaaaatcagcaaggatccatccaagattcct
tcatggcttaaaatcaataagaactatttcccagatttcattatacaggatccgaagaaa
gctcccatttgggaaattactggtgcagagtactcaaaggcagaggctcatacagctggt
gggttatccattcgcttcccacgctgcacacgttttcgtgatgacaaggactggaaaacc
gccacaacactccaacaactaaaggaactttatcgtctctcaaaagagaaatcggacttt
aatatcactgccacatcctctcaagatgaggatggttcatctgaatgcagtagtcgagag
aatgaaggaaactctactcaaacttcttcaggcagcttggttaagacaataaaaaatgtc
ccttcaaaatctcctgccaagggcaaaaccagtgaaagtagtaaactacctcctcagaag
aaaaaagaagagccgatgaaagcagagaagcgcaaatcccacactcctacaactgtacag
agtaaaaaggctaagatttcagaaacaggtcatagtaacggacaccgcatagcccaatca
actgcagctaataaaactcttctggacatattcactggtgtaaagctgcatattccttcc
acacttgatgactttgccaaactgcgccgttattttatcgcctttgatggggacctggta
ccagaatatgatcttcctacagccacacatgtgatgggtgatgcacctgatagtgacaca
gatgccaaacatgtaacaccacactggatatgggcgtgtataagacgcaggcgattagtt
agctgtgttgatgagaattgtgtgtaa

All links

Pathway (2)   
   KEGG PATHWAY (1)   
   KEGG MODULE (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (4)   
   UniGene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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