KEGG   Xenopus laevis (African clawed frog): 398357
Entry
398357            CDS       T01010                                 
Symbol
xrcc6.L, xrcc6
Name
(RefSeq) X-ray repair complementing defective repair in Chinese hamster cells 6 L homeolog
  KO
K10884  ATP-dependent DNA helicase 2 subunit 1
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    398357 (xrcc6.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xla03041]
    398357 (xrcc6.L)
   03400 DNA repair and recombination proteins [BR:xla03400]
    398357 (xrcc6.L)
Spliceosome [BR:xla03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    398357 (xrcc6.L)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA-PK complex
     398357 (xrcc6.L)
SSDB
Motif
Pfam: Ku_N Ku Ku_C SAP DUF6451
Other DBs
NCBI-GeneID: 398357
NCBI-ProteinID: NP_001082274
Xenbase: XB-GENE-970904
UniProt: Q6AZR6
Position
4L:complement(110891297..110908161)
AA seq 611 aa
MTEWGDHFVNQEVEDDEEQEEGESDASAFRFSGRDSLIFLVDASKPMFESIDGELTPFDL
TLQCIRSVYASKIISSDHDLLSVVFFGTRESTNCDPFKHLCVLHDLDTPGAKRILDLDKY
KEEKGRALFCDTIGCGGDFSLGEALWLCSNLFSNVKVKMSHKRIMLFTNEDNPHANDPAK
AKQARAKAEDLKDMGIFLDLMHLEKPGGFDISLFYRDIVNTAEDEDLVVQFKASEKLDDL
LKKVRAKEAKKRALSRLNLKLGPDVGLTVGVYNLVQKAVKPPTVRLYRESNEPVKTKTRI
FHSNTGSLLLPSDTKRSQTYGNRQIVLEKDETEQLKRFDEPGLVLIGFKPISCLKKHHFT
RPAQFIYPEESIITGSTTLFNALLTRCLARQVMAICRYTPRRNTPPRFVALVPQDEELDD
QNMQSAPSGFNLVCLPFADDIRKLDTPEKITANEEQVDKMKEIVHKLRFNFRSDSFENPV
LQQHFRNLEALALDMLEPEPIEDLTLPKVEMIDRRIGSLAEEFKELVYPPGYNPEGKAVK
RKQGGSSDSRVEKKAKADVSISEDELRTYVKNGTLGKLTVPALKEACRGYKLKGSKKQEL
VDALVEYFKKN
NT seq 1836 nt   +upstreamnt  +downstreamnt
atgactgaatggggggatcacttcgtaaatcaggaagttgaagatgatgaggaacaggaa
gaaggagaaagtgatgccagtgcttttcgtttttcgggtcgtgacagtctaatcttcctt
gttgatgcctccaagccgatgtttgagagtatcgatggtgaattgaccccatttgacctt
actttgcagtgcattcgcagtgtctacgccagcaagatcattagcagtgaccatgacctc
ctgtctgtagtgttctttggcactcgtgagagcactaactgtgatccattcaaacacctc
tgtgtccttcatgatttggataccccaggtgctaagcgcatccttgatctggataagtac
aaagaggaaaagggaagagcattattctgtgacactattgggtgtggtggagacttttct
ttgggggaggctctttggctttgctcaaatctctttagcaatgtaaaagtcaaaatgagc
cacaagcgcataatgctgtttactaatgaagacaaccctcatgcaaatgacccagccaaa
gcgaaacaggcaagagccaaggcagaggaccttaaggacatggggatatttttggatcta
atgcaccttgagaaacctggaggatttgacatctctttgttttatcgtgacattgttaac
actgctgaggatgaggatcttgtggtgcaatttaaggcttctgaaaaactggatgatctc
ttaaagaaggtacgggccaaggaagcaaagaagagggccctgtcaagactgaatttaaag
cttgggcctgatgttggtcttactgtgggcgtttataacttggtgcagaaagctgtaaaa
ccacccacagtgaggctttatcgtgaatcaaatgagcctgtgaagacaaagaccaggatc
ttccatagtaacacagggagcctgttgcttcctagtgacaccaagagatctcagacatat
ggaaatcgccagattgtcttggaaaaggacgagacagagcagctaaagagatttgatgaa
cctggcttagtgctgattggattcaaacctatcagctgtttaaaaaaacatcatttcacc
agacctgcccagtttatctatccagaagaatctattatcactggaagcaccactctgttt
aatgctttgcttacaaggtgcctagctcggcaagtgatggccatctgtaggtacacacct
cgcagaaacaccccccctcgctttgtggcattggttccccaggatgaggaattggatgat
caaaatatgcagagcgcgccttctggcttcaatcttgtttgtcttccgtttgctgatgac
atccggaaactcgacaccccagaaaagattactgcaaatgaagagcaagtggataagatg
aaggaaattgtgcataaactgcgctttaatttcaggagtgatagttttgagaacccagta
cttcagcagcactttcgaaatttggaggctcttgctctggatatgctagagcctgaacct
attgaggatctgacattaccaaaagtggaaatgattgatcgtcgcatagggtctctagct
gaagagtttaaagagcttgtttatccaccagggtacaacccagagggcaaagctgtgaaa
cgaaaacaaggtggcagcagcgacagtcgagttgagaagaaagccaaagcagatgtctcc
atctcagaagatgagctaaggacctatgtaaaaaatggaactcttggaaagctgaccgta
cctgcgttaaaggaggcatgtcgtgggtacaaactgaaagggagcaagaagcaggagttg
gttgatgcccttgtagagtatttcaagaagaactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (43)   

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