KEGG   Xenopus laevis (African clawed frog): 431883
Entry
431883            CDS       T01010                                 
Symbol
rfc2.L, rfc2, rfc40
Name
(RefSeq) replication factor C subunit 2 L homeolog
  KO
K10755  replication factor C subunit 2/4
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03030  DNA replication
xla03410  Base excision repair
xla03420  Nucleotide excision repair
xla03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    431883 (rfc2.L)
   03410 Base excision repair
    431883 (rfc2.L)
   03420 Nucleotide excision repair
    431883 (rfc2.L)
   03430 Mismatch repair
    431883 (rfc2.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xla03032]
    431883 (rfc2.L)
   03036 Chromosome and associated proteins [BR:xla03036]
    431883 (rfc2.L)
   03400 DNA repair and recombination proteins [BR:xla03400]
    431883 (rfc2.L)
DNA replication proteins [BR:xla03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    431883 (rfc2.L)
  DNA Replication Termination Factors
   ELG1-RFC complex
    431883 (rfc2.L)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    431883 (rfc2.L)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     431883 (rfc2.L)
  Check point factors
   HRAD17(Rad24)-RFC complex
    431883 (rfc2.L)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 AAA_14 AAA_16 Mg_chelatase AAA_24 Viral_helicase1 AAA_11 Rad17 RuvB_N AAA_assoc_2 AAA_19 MipZ AAA_18 nSTAND3 AAA_5 AAA_28 T2SSE ABC_tran AAA_25 AAA_30 AAA_23 MeaB SLFN-g3_helicase NTPase_1 RNA_helicase AAA_3 FtsK_SpoIIIE bpMoxR
Other DBs
NCBI-GeneID: 431883
NCBI-ProteinID: NP_001084837
Xenbase: XB-GENE-999117
UniProt: Q6NRU3
Position
2L:104590987..104599136
AA seq 348 aa
MDVEMVESAAGESGTKQAAPATKSLAVTYELPWVEKYRPLKLNEIVGNEETVSRLEVFAR
EGNVPNIIIAGPPGTGKTTSILCLARALLGPTMKDAVLELNASNDRGIDVVRNKIKMFAQ
QKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRC
AVLRYTKLTDAQVLARLMDVVEKEKVQCTDDGLEAIVFTAQGDMRQALNNVQSTCAGFGF
VNSTNVFKVCDEPHPLLVKEMLQHCVNANIDEAYKIVAHLWKLGYSPEDIIGNIFRVCKT
FQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTAVSTS
NT seq 1047 nt   +upstreamnt  +downstreamnt
atggatgtggaaatggtagaaagtgctgccggggaatcaggcaccaaacaggccgccccg
gctaccaagagcctggccgtaacttatgaacttccttgggtagaaaaatacaggccattg
aagctaaacgagatagtcggaaatgaagaaaccgtcagccgcctggaagtatttgcaaga
gaaggaaatgttccaaatatcataatcgctgggcctcctggaacaggtaaaaccacaagt
attttgtgtttggcacgtgcgcttttgggacccaccatgaaagatgctgtcttagagctc
aacgcctcaaatgatcgaggcatcgatgtagtgagaaacaaaattaaaatgtttgctcaa
cagaaggtcactcttccaaaaggacgtcacaaaattattatcttggatgaagcggacagc
atgactgatggagcccagcaagctttgagaagaactatggaaatctattccaagacgaca
cgctttgctctagcgtgcaatgcttcagacaagattattgagcccatccagtcccgatgt
gcggtactccgttacacaaaactgacagatgctcaggtccttgcaaggctgatggatgtt
gttgaaaaggagaaagttcagtgtacagatgatgggcttgaggctatagtattcactgca
cagggggatatgagacaggcactgaataacgtgcagtccacttgcgctggatttggcttt
gtaaatagcacaaatgtatttaaggtgtgtgatgagccccatcctttattagtgaaagaa
atgttacagcactgtgtcaatgccaacattgatgaagcatacaagattgtggctcatctg
tggaaactcggttattctcctgaagatataataggcaacatatttagagtgtgtaaaact
ttccaaatgccagaatatcttaaactggaattcataaaggaaatcggatacacacatatg
aaaatagctgaaggagttaactctctattacagatggctggacttcttgctcggctgtgt
cagaagactgcagtttctacaagctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (31)   
   Pfam (31)   
All databases (62)   

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