KEGG   Xiphophorus maculatus (southern platyfish): 102220175
Entry
102220175         CDS       T02923                                 
Symbol
ssu72
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase SSU72
  KO
K15544  RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102220175 (ssu72)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xma03021]
    102220175 (ssu72)
   03019 Messenger RNA biogenesis [BR:xma03019]
    102220175 (ssu72)
Enzymes [BR:xma01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     102220175 (ssu72)
Transcription machinery [BR:xma03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     102220175 (ssu72)
Messenger RNA biogenesis [BR:xma03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     102220175 (ssu72)
SSDB
Motif
Pfam: Ssu72
Other DBs
NCBI-GeneID: 102220175
NCBI-ProteinID: XP_005807327
Ensembl: ENSXMAG00000016586
UniProt: M4AQ82
Position
20:complement(18513302..18517835)
AA seq 194 aa
MPSHPLRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGSHVKLPGPSPDKPNVYDFKTT
YEQMYNDLVRKDKELYTQNGILHMLDRNKRIKAKPERFQLCKDKFDLVITCEERVYDQVL
EDLNSREQETLQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEIDELLQEFE
DKSNRPFLHTVCFY
NT seq 585 nt   +upstreamnt  +downstreamnt
atgccgagccatccgctgcgtgtagcggttgtttgctcgagcaaccagaaccgcagtatg
gaagcgcacaatatcctcagcaaacgtggatttgacgtccgatcatttgggactgggtct
catgtgaagctacctggtccatccccggacaaacctaatgtgtatgacttcaaaacaact
tatgaacagatgtacaacgacttggtccgaaaggacaaggaactatatacacagaatggg
atcttacacatgctggaccgcaacaagcgcatcaaagcaaaaccagagcgctttcaattg
tgcaaggataaattcgacctggtcataacctgtgaagagagagtctatgaccaagtcctg
gaggatttgaattcaagagagcaggagacgttacaaccagttcatgtaatcaatgtagat
attcaggacaaccacgaggaggccacgttgggagccttcctcatctgcgagttgtgtcag
tgtatccagcacacagacgacatggagaacgagatcgacgagctcctgcaggagtttgag
gacaagagcaacaggccttttctccacaccgtctgcttctactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (27)   

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