KEGG   Xiphophorus maculatus (southern platyfish): 102227944
Entry
102227944         CDS       T02923                                 
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma04010  MAPK signaling pathway
xma04137  Mitophagy - animal
xma04141  Protein processing in endoplasmic reticulum
xma04210  Apoptosis
xma04217  Necroptosis
xma04621  NOD-like receptor signaling pathway
xma04622  RIG-I-like receptor signaling pathway
xma04920  Adipocytokine signaling pathway
xma05132  Salmonella infection
xma05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    102227944
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    102227944
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    102227944
  09143 Cell growth and death
   04210 Apoptosis
    102227944
   04217 Necroptosis
    102227944
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    102227944
   04622 RIG-I-like receptor signaling pathway
    102227944
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    102227944
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    102227944
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    102227944
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xma03019]
    102227944
   04121 Ubiquitin system [BR:xma04121]
    102227944
Enzymes [BR:xma01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     102227944
Messenger RNA biogenesis [BR:xma03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     102227944
Ubiquitin system [BR:xma04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    102227944
SSDB
Motif
Pfam: TRAF-mep_MATH TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 Sina_ZnF zf-RING_4 zf-C3HC4_2 zf-RING_5 zf-C3HC4_4 zf-RING_6 zf-C3HC4_5 TRAFD1-XIAF1_ZnF MATH zf_C2HC_14
Other DBs
NCBI-GeneID: 102227944
NCBI-ProteinID: XP_023198644
Ensembl: ENSXMAG00000004905
Position
11:1917993..1933940
AA seq 568 aa
MAAQEPSPPSSLEGNKPGFPKKILANNLEDKHLCNSCQKILRRPLQAQCGHRFCSFCFNK
LVSSGPQKCSACIKEELFEEPTSILKPGGAFPDNAARREVEALAAVCPNEGCTWTGTVRE
FEASHEGNCDFMIIMCPSCKELMRANEQERHNERECPERTLNCKYCKEPFLLKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFKTPCRFHVVGCDTSVEKEKIQDHERQCS
YEHLNLLLHFIMGIKVSLESLQPQTLEVASQKLQVLHQSLRELELKMSQLGGGGPTPVQG
ACALTLATSFTPLPSAMGAALELQLQSEKTKVAELSRRCQELELKVNTFENIVCVLNREM
ERSCTTMEAYNRQHRLDQDKIEILSNKVRQLERTVSLRDLSIVEMEGKMREMSAATYDGV
FIWKISDFTKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVV
MRGHSDALLKWPFNQKVTLMLLDQNNREHIIDAFRPDISSSSFQRPVSDMNIASGCPLFC
PLSKLDSKNSYIRDDTIFIKAIVDLTGL
NT seq 1707 nt   +upstreamnt  +downstreamnt
atggctgcacaagagccgtctccaccatcttccctggaaggcaacaagccgggcttccca
aagaaaattctggccaacaacctggaggacaagcatctgtgcaactcgtgtcagaaaatc
ctgcggaggcccctgcaggcccagtgcggccaccgcttctgctcgttctgtttcaacaag
ctggtgagttctggaccacagaaatgcagtgcatgcatcaaggaggagttgtttgaggag
cccacctccattctcaagcctggcggtgcgttcccagacaacgcagctcggagagaggtg
gaggccttggcagcagtttgtcccaatgaaggatgcacatggactggaaccgtcagagag
tttgaggcgagccatgagggcaactgtgacttcatgatcatcatgtgtccgtcgtgcaaa
gagctgatgagagccaacgaacaggagcgtcacaacgagcgagagtgtccagagaggaca
ctgaactgcaaatactgcaaagagccgttcctcttaaagaacatcaaggctcatgatgaa
atctgccccaagtatccaatgatctgtgaaggctgtgcaaagaaaaagatcccccgtgag
aagtatgtggaccatattaagttctgcagtaaatttaaaacaccatgcagatttcatgtt
gttggctgcgatacgtctgtggagaaggagaagatccaggaccacgagcggcagtgttcg
tacgagcacctcaacctgctgctgcatttcatcatgggcatcaaggtgagtctggagagc
ctccaaccgcagaccttagaggtggccagccagaagctccaggtgctgcaccagtccctc
agagagctggagctgaagatgagccagctgggcgggggcggccccactcccgtgcagggt
gcatgcgctctcaccctggccacgtccttcacccctctgcccagcgccatgggtgccgcc
ctggagctgcagctccagagcgagaagaccaaggtggccgagctgagccggcgctgccag
gagctggagctgaaagtgaacacgtttgaaaacatcgtctgcgtcctgaaccgggagatg
gagcgttcctgcaccaccatggaagcctacaaccgccagcacagactggaccaggacaag
attgagattctcagcaacaaggtccgtcagctggaaaggacggtcagcctgagggatctg
tccatcgtggagatggaggggaagatgagggagatgtctgcagccacctacgatggcgtc
tttatctggaagatctctgatttcaccaagaagaggcaggatgccgtggctggccgcgct
cctgctatgttctctcccgcattttatacgagtaaatacggctacaagatgtgcttacga
atctacctgaatggtgacgggacgggccgtggcacgcacctgtctctgttctttgtggtg
atgagaggacacagcgacgcactccttaagtggcctttcaatcagaaggttaccctcatg
ctgcttgaccagaacaacagggagcacataatcgatgccttccggcccgacatctcatct
tcgtccttccagaggcccgtcagcgacatgaacatcgccagcggctgcccgctcttctgt
cctctgtctaagctggactccaaaaactcctacattcgtgacgacaccatcttcataaag
gccatcgttgacctcactgggctctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (10)   
   KEGG PATHWAY (10)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (16)   
   Pfam (16)   
All databases (51)   

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