KEGG   Xiphophorus maculatus (southern platyfish): 102237955
Entry
102237955         CDS       T02923                                 
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102237955 (snrnp200)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xma03041]
    102237955 (snrnp200)
Enzymes [BR:xma01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     102237955 (snrnp200)
Spliceosome [BR:xma03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    102237955 (snrnp200)
 Complex C
   U5 SnRNP specific factors
    102237955 (snrnp200)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 PhoH SWI2_SNF2 Sigma54_activ_2
Other DBs
NCBI-GeneID: 102237955
NCBI-ProteinID: XP_005804410
Ensembl: ENSXMAG00000002058
Position
12:complement(24117157..24132545)
AA seq 2136 aa
MADVTARNLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKAQRTK
PQKLEERRDKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPSDDTRYHVLVNLGKKIT
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEAVVSTRL
TANLGEAGDVMSEKKKQLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRRMIQYCTMLASAQSEAEKERIIGKMESDQELSKIL
YQLQETEKEDIIREERSRRERVRKSRVDDLEAMDVDHGESVMPRQLLDLEDLAFSQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVAIDKLPKYAQAGFEGFKTLN
RIQSKLFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIA
PMRSLVQEMVGSFGKRLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLIGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVVKLPDMLN
AEIVLGNVQNVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRNSDPLLERRRMDLIHTAAN
VLDKNSLIKYDKRTGTFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLNRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVVKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHIQPITRSTLKVEL
TITPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNSEGRCVYITPM
EALAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPVVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLYCSEKELAPFLEKINDPTLKETLANGVGYLHE
GLTAIERRIVEQLFNSGAVQVVVSSRSLCWGINVSAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSDHIKRCTDKGVESI
FDIMEMEDEDRTSLLQLSDGQMTDVARFCNRYPNIELSYDVAERDNIKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAVGIH
NYTLYFMSDAYMGCDQEYKFSVDVKEADSEGESDSD
NT seq 6411 nt   +upstreamnt  +downstreamnt
atggcggatgttaccgctcgtaacctgcagtatgagtacaaagcgaactcaaacttggtg
ctgcaagcggatcgctccctgatcgaccgcactcggagagatgagcccaccggtgaggtg
ctgtccttggtggggaagctggaggggacaaagatgggggacaaagctcagcggaccaaa
ccccagaagctggaggaacgacgagataagagaagaaaaagagatgaggacagacacgac
atcaacaaaatgaaaggctttaccctcctgtctgagggcatcgatgaaatggtgggcatc
gtgtacaagcccaaaaccaaagaaaccagagagacctatgaagtgctgctgagcttcatc
cacgcagctttaggagatcagcctcgtgatattctgtgtggagcagctgatgaagtgttg
gcggtgctgaagaacgacaaaatgagggacaaagaaaggcgacgtgaagtcgagcaactt
cttggcccgtctgatgacacgcgctatcatgtgctggtcaacctgggaaagaagatcaca
gactacggaggagacaaggacttacagaatatggatgacaacattgatgaaacatatggt
gtcaacgtacagtttgaatctgacgaggaagaaggagatgaggaccagtttggcgaagta
cgagatgaacactcagatgaagacagtgaaggagaagaagcggttgtctccactaggcta
acagcaaatctcggtgaggcgggtgacgtgatgtcagagaagaagaaacagttacatcct
cgggacatcgacgccttctggctccaacgtcagctcagtcggttctacgatgacgccatc
gtctctcaaaagaaggctgacgaagtcttggaaatcctcaagactgcgagtgatgacaga
gagtgtgagaaccagctggtgctgctgctgggcttcaacacctttgacttcatcaaagtc
cttcgtcagcatcgccgcatgattcagtattgtaccatgctggccagcgctcagagcgag
gcagaaaaggagcggatcattggaaagatggagtcggatcaggagctttcaaagattctc
taccagctgcaggagactgagaaggaggacattatcagagaagaacgatctcgcagagag
agagtgaggaagtctcgagtggatgacttggaagcgatggatgttgaccacggagagtca
gtgatgcctcggcagcttctggacctggaagacttggccttcagtcaaggcagccacttc
atggccaacaagcgatgccagctgccagacggctcctttcgtaagcagcgtaaaggttat
gaagaagtccacgtgcctgctctcaagccgaaaccctttgctgacgatgaggtacttgtt
gccattgataagttgcccaagtatgcccaggctggattcgaaggcttcaaaactctaaac
cgcattcagagcaagctgttcaagaccaccatggagacggatgaaaacttgcttgtgtgc
gcgcctacgggagccggtaagaccaatgtcgccttgatggcgatgctgagggaaatcggg
aagcacataaacatggatggaacaatcaatgtggatgactttaaaatcatctacattgca
cccatgcgctcactcgtacaggagatggtgggaagttttggcaagcgtcttgcaagctac
ggcatcatcgtatctgagctgaccggagaccaccagctctgtaaagaggagatcaacgcc
actcagatcatcgtctgcacccctgagaaatgggacatcatcactcggaaaggcggcgag
cgcacctacacccagctggtgcgcctcatcatcattgatgaaatccatttgctgcacgac
gaccgcggccctgtgctggagtccctggtggcaaggaccatccgtaacgtggagctgacc
caggaggacgtgcggctgatcggtctcagcgccacgctgcccaactatgaagacgtagcc
acctgcctgcgcgttgatcctgcaaaggggctgttttactttgacaacagttttcggcct
gtgccccttgagcagacgtacgttggtatcacagaaaagaaagccatcaaacgtttccaa
atcatgaatgagatcgtttatgaaaagatcatggagcatgctggaaagaaccaggtcctg
gtttttgttcactccaggaaagagacaggaaagaccgccagagccattcgggacatgtgc
ttggagaaggacactctgggtttgttcctgagagagggttctgcttctactgaagtgttg
agaaccgaggcagaacaatgcaaaaacttggagctaaaggatttgcttccttatggcttt
gctatccatcacgccgggatgaccagagtggaccgtacgctggtggaggatctgttcgca
gatcgacacatccaggttctggtgtccacagccactctggcttggggtgtgaacctgccg
gctcacaccgtcatcatcaaaggaacccaggtttacagcccagagaaaggcagatggacg
gagctgggagcgctggacattttacagatgctgggtcgagccggccgtccgcagtatgac
accaagggagagggaatcctaatcacttctcacggagagctgcagtattacctgtccctg
ctgaaccagcagctgcccatagagagccagatggtggtgaagcttcctgacatgctcaac
gcagagatagtgctgggaaacgttcagaatgtgaaggatgctgtgaactggctcggctat
acctacttgtacgtgcgcatgctccgcaacccgacgctgtatggagtatcccacgacgac
cgaaattcagacccgctgctggagaggcgcaggatggacctgattcacacagccgctaac
gtcctggacaagaacagcctcattaaatatgacaagaggacgggaactttccaggtaaca
gacctaggtcgcattgccagccacttctacatcacccacgactccattcagacctacaac
cagctgctgaagcccacgctcagtgagatcgaactcttcagagtcttttcactgtcctca
gagttcaggaacatcacagtgagagaggaggaaaaacttgagcttcagaagcttctggaa
agagttcccattcctgtaaaggagagcattgaggagcctagcgctaagattaatgttctg
cttcaagctttcatctctcagctcaaactggaaggctttgccctgatggcagacatggtt
tacgtcacacagagtgctggtcgtttaatgcgggccatatttgagattgtgctcaaccgt
ggctgggcccagctcacagacaagaccatgaatctctgcaagatgattgacaaacggatg
tggcagtcgatgtccccactgcggcagttcaagaagcttcctgaagaggtcgtcaagaag
atcgagaagaaaaacttccccttcgagcgtctctatgatctcaaccacaatgagattggt
gagctgatccgcatgccgaagatgggtaagaccattcataaatacgtgcaccagttcccc
aagcttgacctggctgtccacattcagcctatcactcgctccacgctcaaagtggagctg
accatcacgccggacttccagtgggatgataagattcatggatcgtctgaagccttctgg
atcctggtggaggatgtcgacagtgaagtcatcctccaccatgagtacttcctgcttaag
gccaagtacgcccaggacgagcaccttgtgaccttctttgttccggtgtttgagccttta
cctccacagtacttcattcgtgtcgtctcggaccgatggctctcttgtgagacgcagctg
cccgtgtccttccgtcaccttatcctacctgaaaagtacccgccacccacggagctgctg
gatctgcagccactgcctgtcaccgcgctcagaaactctgccttcgaggctctttatcag
aacaagttccctttctttaaccccatccaaacacaagtcttcaatgctgtgtacaacagt
gatgataatgtgtttgttggagctccaactggcagcggaaagaccatctgtgcagagttc
gccatcctgagaatgctgctgcacaactcagagggtcgctgcgtctacatcaccccaatg
gaagcgctggcggagcaggtgtttgttgactggcaccagaaattccaggatatcctgaac
aagaaggtggttctgctgacgggagaaaccagcacagatctgaagctgctgggaaaaggc
gacatcatcgtcagcaccccggacaaatgggacatcctgtctcgtcgctggaaacagcga
aagaacgtccagaacgtcagcctcttcatcgtggatgagacgcacctcatcggaggagaa
aacggacctgtgctggaggtcatctgctcgaggatgaggtacatctcctctcaaatcgag
cgccccatccgcatcgtggctctcagctcatcgttgtccaacgccaaggacgtggctcac
tggctgggctgcagcaccaccgctacgttcaacttccaccccaacgtcaggcctgtgcct
ctggagctgcacatccagggcttcaacgtgagccacactcagacccgcctgctgtccatg
gccaaaccggtgtatcacgccatcatgaagcattctccctccaagcctgtggtggtgttc
gtcccatcccgtaggcagacccgcctcaccgccattgacatcctcacgttctgcgccgct
gatgtcgtccctcagaggttcctgtactgctctgagaaagaactggctccattcctggag
aaaataaacgacccgactctgaaggaaactctagccaacggagtggggtacctgcacgag
ggcctgactgccattgagcgtcggatagttgagcagctttttaactctggtgctgtccag
gtggtggtctcctcacgttcgctctgctggggcatcaacgtctctgcccatctcgtcatt
gtcatggacacccagtactacaatggaaaaatccatgcgtatgtggactatcccatatat
gatgtcctccagatggtcggcaaggcaaacaggcccatgctggatgacgagggacgctgt
gttatcatgtgtcagggatccaagaaggacttcttcaagaagtttctgtacgagccactg
cccgtagagtcccacctggatcactgtctccacgatcacttcaacgccgagatcgtcacc
aagacggtcgagaacaagcaagacgccgtcgactacctgacctggacgttcctctacaga
cggatgacgcagaaccccaactactacaacctgcaaggcatgtcccatcgccacctgtcc
gatcacctgtccgagctggtggaaaacaccctacatgacctggagcagtccaagtgcatc
agcatcgaggacgaaatggacgtcgctccgctcaacctgggaatgatcgccgcttactac
tacatcaactacacaacgatcgagttgttcagtatgtccctgaacgccaagacgaagatc
cgtgggttgatcgagatcatctccaacgcagctgaatacaagaacattcccatcaggcac
catgaagacacgcttctccgacagctggcgcagaaagttccccacaagctgaacaacccg
aagttcaacgatcctcacgtgaagaccaacctgctgctgcaggcccacctctccaggatg
cagctgagcgccgagctccagtcagacacggaggagatcctgagcaaggcgatccgtctg
attcaggcctgcgtcgacgtgctgtccagtaacggctggctgagtcccgccctggccgcc
atggagctggcgcagatggtcacccaggccatgtggtccaaggactcttacctgaagcag
ctgccccacttcacctcagaccacatcaaacgctgcactgacaaaggtgtggagagcatc
tttgacatcatggaaatggaggacgaggacagaacgtctttgctgcagctctccgacggg
cagatgaccgacgtggctcgcttctgtaaccgctaccccaacatcgagctttcttatgac
gtagcggagagggacaacatcaaaagcggcagtccagttctggtccaggtgcagctcgag
agagaggaagaggtgacgggtccagtcatcgcaccactcttccctcagaaacgtgaggag
ggctggtgggtggtcatcggagaccccaagtcgaacagcctcatctctatcaagaggctg
actcttcagcagaaagcaaaggtcaagctggactttgttgcgcctgctgtgggcatccat
aactacaccctgtactttatgagcgacgcttacatgggctgtgaccaggagtacaaattc
agcgtggatgtgaaagaggccgacagcgagggggaaagtgactcagactaa

DBGET integrated database retrieval system