KEGG   Xiphophorus maculatus (southern platyfish): 102238432
Entry
102238432         CDS       T02923                                 
Symbol
smarca4
Name
(RefSeq) transcription activator BRG1 isoform X1
  KO
K11647  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    102238432 (smarca4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xma03021]
    102238432 (smarca4)
   03036 Chromosome and associated proteins [BR:xma03036]
    102238432 (smarca4)
Transcription machinery [BR:xma03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     102238432 (smarca4)
Chromosome and associated proteins [BR:xma03036]
 Eukaryotic type
  Histone modification proteins
   HDAC complexes
    REST complex
     102238432 (smarca4)
  Chromatin remodeling factors
   BAF complex
    102238432 (smarca4)
   PBAF complex
    102238432 (smarca4)
   GBAF(ncBAF) complex
    102238432 (smarca4)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C SnAC Bromodomain HSA BRK QLQ ResIII HDA2-3 DEAD DUF2009
Other DBs
NCBI-GeneID: 102238432
NCBI-ProteinID: XP_023204887
Ensembl: ENSXMAG00000006321
Position
16:complement(21004516..21027709)
AA seq 1630 aa
MSTPDPPMGGTPRPGPSPGPGPSPGGMMGPSPGPSPGSAHSMMGPSPGPPGSGHPHPPQG
PSGYPQDNMHQMHKPMDPMHDKGMPDDPRYGQMKGMGMRPGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPGAGPMEGSGDPAQSMGQPNRAGPPGPSGPPGVVPGAA
GGPTPFNQNQLHQLRAQIMAYKMLARNHPIPEHLQLAVQGKRPMPGMQQQQPPPMPNMPP
SAGPGGGPPAGPGPVPVPVPGPAQTNYNRPHGMVGPNMAPPGPAGVPPAMQGQPANGPPK
SWPEGPMVNAAAPSNPPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQLPPM
MLHQKQNRITPIQKPHGLDPVEILQEREYRLQARIVHRIQELEHLPGSLAGDLRTKATIE
LKALRLLTFQRQLRQEVVACMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIE
QERKRRQKHQEYLNSILQHAKDFKEYHRSITAKIQKATKAVTTYHANTEREQKKENERIE
KERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAAQALKEKKKK
KKKKKPDAIEGGAPAMGPDGEPLDETSQMSDLPVKVIHVDSGKILTGVDAPKAGQLEAWL
EMNPGYEVAPRSDSEDSGSEDEEEEDEDDAEDQPQPTTASTEEKKKIPDPDSEDVSEVDV
QHIIEHAKQDVDDEYGSASFNRGLQSYYAVAHAVTEKVDKQSSLMVNGMLKQYQIKGLEW
LVSLYNNNLNGILADEMGLGKTIQTIGLITYLMELKRINGPFLIIVPLSTLSNWVYEFDK
WAPSVVKVSYKGSPQARRSFVPILRSGKFNVLLTTYEYIIKDKQILAKIRWKYMIVDEGH
RMKNHHCKLTQVLNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFN
APFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQ
RVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLG
FSGGIVTGPDLYRASGKFELLDRILPKLRATKHKVLLFCQMTSLMTIMEDYFGYRNFKYL
RLDGTTKAEDRGMLLKTFNDPASEYFVFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDL
QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGCERR
AFLQAILEHEEQDEEEDEVPDDETVNQMIARSEEEFELFMRMDLDRRREDARNPKRKPRL
MEEDDMPGWILKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGNL
EDIEEEVRHKKTTRKRKRERDHDGSPATPSSSHRGRDKDDSGKKAKKRGRPPAEKLSPNP
PSLTKKMKKTVDAVVKYKDGNGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRS
HKYRNLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKDDESEGEESE
EEEEEMDEGSESESRSVKVKIKLSRKDKGDRGGKGQRRRGRGSRAKPVVSDDDSEDEQEE
ERSASGSEDD
NT seq 4893 nt   +upstreamnt  +downstreamnt
atgtcgacccccgacccaccgatgggagggacgccgcggcccggtccctccccgggcccg
ggaccatctccaggaggcatgatgggccccagccccgggccctcaccgggctcggcccac
agcatgatggggcccagcccagggccgcccggctctggccacccccaccccccacaggga
ccctcaggatatcctcaggacaacatgcaccagatgcacaaaccaatggaccccatgcac
gataaggggatgcctgatgaccctcgctatggtcagatgaagggtatgggcatgaggcct
ggtggacacagcggcatgggaccgccccccagcccaatggaccaacattcccagggatac
ccctctccattgggcggctcggagcacgcgcccagccccgtcccggccaacggccccccc
tctggccccggagccggtcccatggagggcagcggggaccccgcccagagcatgggccaa
cccaaccgggccgggcccccgggtcccagtgggccgccaggggtcgtaccgggcgccgcc
ggcggacccacccctttcaaccagaaccagctgcaccaactcagggcccagatcatggct
tacaagatgctggcgcgcaatcacccaatcccagagcacctgcagctggccgtgcagggc
aagaggcccatgcctgggatgcaacagcagcagccgccccccatgcccaacatgccaccc
tccgccgggcctgggggcggcccacctgcggggccgggaccagtaccagtaccagtaccg
ggaccagctcagaccaactacaacagacctcatgggatggtaggtcccaacatggcgcca
cccggacccgcaggagttcctcctgctatgcaaggccagcctgccaacggaccacccaaa
tcatggcctgaaggaccaatggtgaacgccgctgccccatccaatcctccccagaagttg
attcccccccagcccaccggcagaccctcacccgccccgccgtccgtgcctccagctgcc
tccccggtgatgcccccgcagacgcagtcgccggggcaaccggcgcagctccctcctatg
atgctgcaccagaagcagaaccgcatcacgcctatccagaagccccacgggctggacccg
gtggagatcctccaggagagagagtacaggctacaagctcgtattgttcaccgcattcag
gagctggagcatctgcctggctcacttgccggtgatctgaggacaaaggccaccatcgag
ctcaaggctctgaggctgcttacgttccagagacagctgcgtcaagaggtggtggcttgc
atgcgtcgggacacagctttggaaaccgccctgaacgccaaagcctacaagcgcagcaag
cgtcagtctctacgagaggcccggatcacagagaagctggagaaacagcagaagatcgaa
caagagcgaaaacgtcgccagaaacaccaggaatacctcaacagcatcctgcagcatgcc
aaggactttaaagaataccaccgctccatcacagccaagatccagaaggccaccaaggct
gtgactacctatcacgccaacaccgagcgtgagcagaagaaggagaatgagcgcatcgaa
aaggagagaatgcggaggctgatggctgaggatgaggagggctaccggaagctcatcgac
cagaagaaagacaaacgcctggcctacctactgcagcagaccgacgaatacgtggccaac
ctcaccgagttggtgcgcgcccacaaggcagcacaagctctcaaagagaagaaaaagaag
aaaaaaaagaagaagccagacgccattgaaggcggtgcgcctgctatgggacctgatgga
gagcctctagacgaaaccagtcagatgagcgacctgccggtgaaggtcatccacgtggac
agcggaaagatcctgactggcgtcgacgcacctaaggctggccagttggaagcctggttg
gaaatgaaccctggctatgaagtggcgccgcgttcagacagcgaggacagcggttcagaa
gacgaagaggaggaagatgaggacgacgcagaggaccagcctcagcccacgacagcttca
accgaggagaagaagaagattccagaccccgacagcgaagacgtttcggaagttgacgtc
cagcacatcatagagcacgccaagcaggacgtcgacgacgaatacggcagcgccagcttc
aaccgaggcctgcagtcgtactacgccgtggcgcacgccgtcaccgagaaagtggacaag
cagtcctctctgatggtcaacgggatgctcaagcagtaccagattaaaggtctggagtgg
ctggtgtcgctttacaacaacaacctgaacggcatcctggccgacgagatgggcctgggg
aagaccatccagaccatcggcctcatcacgtacctcatggagctcaagcgcatcaacggg
cccttcctcatcatcgtaccgctctcgactttatcgaactgggtgtacgagtttgacaaa
tgggctccgtcagtggtgaaagtctcctacaagggctccccgcaggctcgccgctcgttt
gttcccatcctgcggagcgggaagttcaacgttctgctcaccacgtacgagtacatcatc
aaagacaagcagatcttagccaagatccgctggaagtacatgatcgtggacgagggccac
cgcatgaagaaccaccactgcaagctgacgcaggtcctgaacacgcactacctggcgccg
cggcgcctcctgctgacagggacgccgctgcagaacaagctgcccgagctctgggccctg
ctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgagcagtggttcaac
gctccgttcgccatgaccggggaaaaggtggacctgaacgaagaggagaccatcctgatc
atccgacgtctgcacaaggtgctccgcccgttcctgctgcgccggcttaagaaagaggtg
gaggcccagctgccagagaaggtggagtacgtgatcaagtgcgacatgtcggctctgcag
agagttctgtaccgccacatgcaggccaaaggcgttctgctgaccgacggctcggaaaaa
gacaagaagggtaaaggcgggacaaagaccctgatgaacaccatcatgcagctgaggaag
atttgcaaccacccctacatgttccagcacatcgaggagtccttttccgagcacctcggc
ttttccggaggaatcgtgactggccctgatctgtaccgtgcctcgggcaagttcgagctg
ctggatcgcatcctgcccaagctgagagccaccaaacacaaagtgctgcttttctgccag
atgacgtcgctcatgaccatcatggaggactacttcggttaccgcaatttcaaatacctg
cgtttggatggaaccaccaaagcagaagaccgcggcatgttgctgaaaaccttcaacgac
ccggcctcagagtactttgtgttcttgctgagcaccagggcaggaggcctggggctgaac
ctgcagtctgccgacaccgtcatcatcttcgacagcgactggaaccctcaccaggacctt
caggctcaagacagagcgcaccgcatcgggcagcaaaacgaggtgcgcgtgctccgcctt
tgcaccgtcaacagtgtggaggagaagatcctggcggcggccaagtacaagctgaacgtg
gaccagaaggtcatccaagccggcatgttcgaccagaagtcctccggctgcgagcggcgg
gccttcctgcaggccatcctggagcacgaggagcaggacgaggaggaggacgaggtgcca
gacgatgagaccgtcaatcagatgattgcaagaagtgaagaagagtttgagcttttcatg
cgaatggacctggacaggcgccgcgaggacgcccgcaaccccaagaggaagccgcggctg
atggaggaggacgacatgccaggctggatcttgaaggacgacgccgaggtggagaggctg
acctgcgaggaggaggaggagaagatgttcggccgcggctcccgtcagcgcaaggaggtg
gactacagcgactcgctgaccgagaagcagtggctcaaggccatagaagaaggaaacctg
gaggacatagaggaggaggtgcggcacaaaaagacgaccaggaagcgcaagagagagcgc
gaccacgacggcagcccggccacgcccagctccagccaccgcgggcgggacaaggacgac
agcgggaagaaggccaagaaacgcggccggccgccggcggagaagctctcccccaacccg
ccgtccctcaccaagaagatgaagaagaccgtcgacgccgtcgtcaaatacaaggacggt
aatggccgccagctgagcgaagtcttcatccagctgccgtctcggaaggagctgccggag
tactacgagctgatccgcaagccggtggacttcaagaagatcaaggagcggatccgcagt
cacaagtaccgcaacctcaacgacctggagaaggacgtgatgctgctgtgtcagaacgcc
cagacctttaacctggagggctctctgatctacgaggactccatcgtgctccagtctgtc
ttcaccagcgtgaggcagaagatcgagaaagacgacgagagcgagggagaggagagcgag
gaggaggaggaggagatggacgaaggctccgagtctgaatctcgatcggtgaaggtgaag
atcaagctgagccggaaggacaagggcgaccgagggggcaaaggtcagaggcggaggggc
cgcggctcccgggccaaacccgtcgtcagcgacgacgacagcgaggacgagcaggaggag
gagcgttcagccagcggcagtgaggatgattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (46)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (11)   
   Pfam (11)   
All databases (68)   

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