KEGG   Xenorhabdus nematophila ATCC 19061: XNC1_0004
Entry
XNC1_0004         CDS       T01274                                 
Symbol
gyrB
Name
(GenBank) DNA gyrase, subunit B (type II topoisomerase)
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
xne  Xenorhabdus nematophila ATCC 19061
Brite
KEGG Orthology (KO) [BR:xne00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xne03032]
    XNC1_0004 (gyrB)
   03400 DNA repair and recombination proteins [BR:xne03400]
    XNC1_0004 (gyrB)
Enzymes [BR:xne01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     XNC1_0004 (gyrB)
DNA replication proteins [BR:xne03032]
 Prokaryotic type
  DNA Topoisomerases
   XNC1_0004 (gyrB)
DNA repair and recombination proteins [BR:xne03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      XNC1_0004 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB GyrB_insert DNA_gyraseB_C HATPase_c Toprim GyrB_hook HATPase_c_3 DUF6865
Other DBs
NCBI-ProteinID: CBJ88097
UniProt: D3VG07
Position
3795..6209
AA seq 804 aa
MSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDKIV
VTIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELTIRRDGKVHEQTYHHGVPQSPLNIVGDTEQTGTTVRFWPSMDTFKINT
EFEYDILAKRLRELSFLNSGVSIRLVDKRTNAEDLFHYKGGIKAFVEFLSRNKNPIHPNV
FYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKE
GYNKKSKVSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEY
LLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQPPLYKVKKG
KQEQYIKDDDAMEAYQMSIALDGAALYTNPHAPGLKGEALENLVTEFNTTQKLIHRMERL
YPLALLNSLIYHPKLTEDALNDQTKVEEWVSALTIRLNDKEQHGSTYSYHIHENRERQVF
EPVLCIRTHGVDTNYSLDFDFIHGGEYRRITKLGDLIGNLIDEDAYIERGERRQAISSFE
HALEWLSKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAIATDLLFTTL
MGDAVEPRRAFIEENALKAANIDI
NT seq 2415 nt   +upstreamnt  +downstreamnt
atgtcgaatacatatgactcctcaagtatcaaggtattaaaagggctggatgctgtccgt
aaacgtccaggcatgtatatcggtgataccgatgatggtactggtctacaccacatggtc
ttcgaggttgttgacaacgctatcgacgaagccctcgcaggtcattgtgacaaaatagtt
gtcaccatccatgcagataactcagtgtctgtacaggatgatggccgcggtattcctacc
ggcatacacgaagaagaaggggtttcagcggcggaagttatcatgactgtgctgcatgcg
ggggggaaattcgatgacaactcctataaagtttccggcggcctgcatggcgtaggggtt
tctgttgttaacgccttatcggaaaaactggaactgactatccgtcgtgacggtaaagtc
cacgaacagacttaccatcatggtgttccacagtctccgctgaacattgtcggtgatacc
gagcagacaggaaccacggttcgtttctggccaagcatggatacgttcaagattaacact
gaattcgaatacgatattctggctaagcgcctgcgtgaattatcattcctgaattccggt
gtttctattcgtttagttgataaacgcaccaatgccgaagatctcttccactataaaggc
ggtatcaaagcgtttgttgagttcctcagccgcaataaaaacccgattcacccaaatgtt
ttttatttctccacagaaaaagacggtattggtgttgaaatttccatgcaatggaatgat
ggttttcaggaaaacatttactgcttcaccaacaatattcctcagcgcgatggcggaacg
cacttagtgggtttccgtaccgcgatgacccgaaccctcaatagctacatggataaagag
ggctacaacaaaaaatccaaagtcagcgccaccggtgatgatgcccgtgaaggtttgatt
gcagttatttccgttaaagtacctgatcctaaattctcttcccagacgaaagacaaactg
gtttcttccgaagtgaaaacggcggtcgaaacgctgatgaatgagaagctggtggaatac
ctgctggaaaacccgaacgacgccaaaacggttgtcggcaaaatcattgatgcggctcgc
gcccgtgaagctgcacgtaaagctcgtgaaatgacccgtcgtaaaggtgcactggatctg
gccggtttgccgggcaaactggctgactgtcaggagcgtgacccggctttgtccgaactc
tacctggtggagggtgattctgcgggtggttcagcaaaacaggggcgtaaccgtaaaaat
caggcgatcctgccactgaaaggtaagatcctgaacgttgagaaagcccgttttgacaaa
atgctctcttcacaggaagtcgcaaccttgatcacggcgctgggctgcggtattggccgt
gatgagtacaacccggacaagctgcgttatcacagcatcatcatcatgaccgatgccgat
gttgatggttctcacatccgtaccctgctgctgaccttcttctatcgccagatgccggaa
atcattgagcggggctatgtttatatcgctcagccaccactgtacaaagtgaagaaaggc
aaacaagagcaatacatcaaagatgacgatgcaatggaagcgtaccagatgtccatcgca
ttggatggcgcggcgttgtacaccaacccgcatgctccggggctgaaaggtgaagcattg
gaaaatctggtgactgagttcaacacaacccagaaactcatccatcgtatggagcgcctg
tatccgctggctctgctgaacagtctgatttaccatcctaaactgaccgaagatgcactg
aatgatcagacaaaagtggaagaatgggtaagcgcgctgactattcgtttgaatgacaaa
gaacagcatggcagcacttacagctatcacatccatgagaaccgtgaacgccaggttttc
gagccagttctgtgcattcgtacacatggtgttgataccaactacagtctggatttcgat
ttcatccacggtggcgaataccgccgcatcaccaaactgggtgatttgatcggaaacctg
attgatgaagatgcatatattgaacgtggtgaacgccgtcaggcaataagcagctttgag
catgcgctggagtggctgagcaaagagtcacgccgtggtctttccatccaacgttataaa
ggtctgggggaaatgaacccagagcagttgtgggaaacaaccatgaacccggaaacgcgt
cgtatgatgcgtgtcaccgtgaaagatgcaattgccactgacctgctgttcacaaccctg
atgggtgatgcagttgaacctcgtcgggcatttattgaagaaaatgctctgaaagcagcg
aatattgatatttaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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