KEGG   Xenorhabdus nematophila ATCC 19061: XNC1_0139
Entry
XNC1_0139         CDS       T01274                                 
Symbol
yibK
Name
(GenBank) putative tRNA/rRNA methyltransferase
  KO
K03216  tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
Organism
xne  Xenorhabdus nematophila ATCC 19061
Brite
KEGG Orthology (KO) [BR:xne00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:xne03016]
    XNC1_0139 (yibK)
Enzymes [BR:xne01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.207  tRNA (cytidine34-2'-O)-methyltransferase
     XNC1_0139 (yibK)
Transfer RNA biogenesis [BR:xne03016]
 Prokaryotic type
  tRNA modification factors
   Methyltransferases
    XNC1_0139 (yibK)
SSDB
Motif
Pfam: SpoU_methylase Malate_DH
Other DBs
NCBI-ProteinID: CBJ88227
UniProt: D3VGD7
Position
127785..128288
AA seq 167 aa
MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQH
HDYNAFLESEGLSSVNSQSHSGARLFALTTKGTPAHSNVSYRDGDYLMFGPETRGLPSYV
LDNMPPEQKIRIPMLSDSRSMNLSNTVAVVVFEAWRQLGYPGALLRD
NT seq 504 nt   +upstreamnt  +downstreamnt
atgctaaacatcgtcctattcgaaccagaaattccgcctaacacaggcaatatcattcgc
ctttgtgcgaacacaggctgccagcttcatcttattcaaccgttaggtttcacatgggat
gacaaacgcttgcgtcgcgctgggttggattaccatgaattcgccaacatcaagcagcat
cacgattacaacgcattcttggaaagtgaaggccttagttcagtcaattcacaatctcat
tctggtgcacgcttatttgccttaaccacaaaaggcactccggcgcacagtaatgtgagt
tatcgtgatggtgattatttgatgtttggcccggaaacccgtggtttgccgtcttatgtg
ttagacaacatgccacctgaacagaagatcagaattcctatgctgtcggatagccgcagc
atgaatctttctaatactgtagcggtggtggtgtttgaagcatggcggcaactagggtat
cccggtgctttattgcgggattaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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