KEGG T01873: XOC

Xanthomonas oryzae pv. oryzicola: XOC_2085

Entry

XOC_2085 CDS T01873

Gene name

ligD

Definition

DNA polymerase LigD, polymerase domain-containing protein

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

xor Xanthomonas oryzae pv. oryzicola

Pathway

xor03410	Base excision repair
xor03420	Nucleotide excision repair
xor03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:xor03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:xor03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:xor03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_primase_S Methyltransf_24

Other DBs

NCBI-GI:

384419039

NCBI-GeneID:

12274202

UniProt:

G7TCQ3

Position

2081590..2082582

AA seq 330 aa
MSLSSARRSPKRDGNQSEIRATQAPTRAATRATRKSAVAAPAADAMPTLSSPTKLIYPDI
RATKRDVWDYYHAVMDHLLPQIVGRLLSIIRCPSGAVKPCFFQKHHTAGLERVSSVKLTE
ETAANAYYLVVEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVR
RAANDIRKLLAQVELESFLRVSGGKGLHVVAPLNPGCDWKVTKRFAKGFADALAQAEPQR
FIATATKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLAWSDLSKLQRADAFTLRDAP
EKLRRRCKDPWAGMDRIQQNLARWAEQDED

NT seq 993 nt +upstreamnt +downstreamnt
gtgtcactctcttctgccaggcgttcgccgaagcgtgatgggaaccaatccgagatcagg
gccacgcaggcaccgacgcgtgcagcaacgcgcgctacgcgcaaatcggcagttgcggca
cctgctgcggacgcgatgccgacgctgtccagcccgaccaagctgatctacccggacatc
cgcgcgaccaagcgcgacgtctgggactactaccacgccgtaatggatcacctgttaccg
cagatcgtgggccggctgctgtcgatcatccgctgcccgagcggagcggtaaagccgtgc
tttttccagaaacaccacacggccggccttgagcgcgtaagctcggtcaagctgaccgaa
gagaccgctgccaacgcgtattacctcgttgtcgaagatgcacccggcctgctggaactg
gtgcaattcaatgcgctggaattccatccctggggctcgcatgcggatcgcccggatgtt
gccgaccgtgtggtattcgatctcgatccgggtccggacgtgccgtttgccgaagtcaga
cgtgcggcgaacgatatacgcaagttgttggcgcaagtggagctggaatcgttcctgcgc
gtctccggcggcaaaggtctgcacgtggtggcacccttgaatccgggctgcgattggaag
gtcaccaagcgcttcgccaagggcttcgccgatgcgctcgcgcaggccgagccgcagcga
ttcatcgccaccgccaccaagcgcatcttcgtcgactatctgcgcaacggccgcggcgct
accgcagtagcgtcctattcactgcgtggccgaccaggcgcgccggttgcgttgccgctg
gcctggtcggacttgtccaagctgcaacgggcggatgccttcaccttgcgcgatgcgccg
gagaagctgcgccgccgttgcaaggatccgtgggcaggcatggaccgcatccagcaaaac
ctggcgcgatgggcggagcaggatgaggactga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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