KEGG T01873: XOC

Xanthomonas oryzae pv. oryzicola: XOC_3163

Entry

XOC_3163 CDS T01873

Definition

DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

xor Xanthomonas oryzae pv. oryzicola

Pathway

xor03410	Base excision repair
xor03420	Nucleotide excision repair
xor03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:xor03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:xor03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:xor03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

384420069

NCBI-GeneID:

12272067

UniProt:

G7TA76

Position

3223843..3225447

AA seq 534 aa
MKRFAALYRTLDRSTGTLDKRAALVAYFRDAPALDAAWALYLLAGGKVASARMRIAGSGE
LREWITDTAGIADWLVADSYDHVGDLAETLALLLDDPVTEAADLPLAEWIEQRLLPIANQ
DVEVRKACIVQAWRSLAFDERLVFNKLLTGALRVGVSQRLVQQALAELSGVDIARIAQRM
LGSWRPHPTYLAELLTSQELPGDRQQPYPFFLASPLEAEVQTLGAIDDWLLEWKWDGIRL
QLIRRAGEAALWSRGEERLDGRFPEIEHAAQQLPDGTVIDGELLAWQPEQSLPMPFTALQ
TRIQRLKPGPKTLTAAPARVVAYDLLELDGADLRERPLQERRALLEGVLTTLADPRIVAS
PLVQVSDWHAAAQVRVEARERGVEGLMLKRAGSVYQSGRRRGDWWKWKIDPLTIDAVLLY
AQAGHGRRSTLYTDYTFGLWHEGQLVPIAKAYSGLDDSEILQLDRWIRANTTERFGPVRA
VTAHHVFELGFEAVNRSARHKSGIAVRFPRILRWRQDKPMADADHLSSLQALAR

NT seq 1605 nt +upstreamnt +downstreamnt
gtgaagcgtttcgcggcgttgtaccgcaccctggatcgcagcaccggcacactcgacaag
cgcgccgcgctggtggcgtatttccgcgatgcgccggcgctggatgcggcgtgggcgctg
tatctgctggccggtggcaaggtggccagcgcgcgcatgcgcatcgccggcagcggcgaa
ttgcgcgagtggatcaccgacaccgccgggattgccgattggctggtggccgacagctac
gaccacgtcggcgatctggccgaaaccctggccttgctgctggacgatccggtcaccgaa
gcggccgatctgccactggcggagtggatcgaacagcgcctgctgccgatcgccaaccag
gacgtggaagtgcgcaaggcctgcattgtgcaagcatggcgcagcctggccttcgacgag
cggctggtgttcaacaagctgctcaccggcgcgctgcgcgtgggggtgtcgcagcggctc
gtgcagcaggcattggccgaattgtcgggcgtggatatcgcgcgcattgcgcagcgcatg
ctcggcagttggcggccgcatccgacctatcttgcggagttgttgaccagccaagaactg
cccggcgatcgccagcagccctacccgttctttctggcatcgccgctggaagccgaggtc
caaacgctgggcgccatcgacgactggctgctggaatggaaatgggacggcatccgcctg
caactgattcggcgcgcaggcgaagcggccttgtggtcgcgcggcgaagagcgcctggac
ggtcgctttccagaaatcgaacacgccgcgcagcagttgcccgacggcaccgtgatcgat
ggcgagctgctggcctggcaaccggagcagtccctgccgatgccatttactgcactgcag
acgcgcatccagcggctcaagcccgggcccaagaccttgaccgccgcgcccgcgcgcgtg
gtggcctacgacctgctggaactggatggcgcagacctgcgcgagcgcccgttgcaggag
cggcgcgcattgctggaaggcgtcctcaccacgctggcagatccgcgcatcgtcgcctcg
ccgctggtgcaggtcagcgattggcacgccgcagcgcaggtgcgtgtggaagcgcgcgag
cgcggggtggaaggactgatgctcaagcgcgccggttcggtgtatcaatccggtcgccgg
cgcggcgattggtggaaatggaagatcgacccgctcaccatcgatgccgtgctgctgtat
gcgcaggccggccacggccgacgcagcacgctctataccgattacaccttcgggctgtgg
cacgaaggccaactggtgccgatcgccaaggcgtattcgggtctggacgacagcgaaatt
ctgcagctggatcgttggatccgggccaataccaccgagcgcttcggcccggtgcgcgcg
gtcacggcgcatcatgtgttcgagctggggtttgaagcggtgaaccgtagcgcgcggcac
aaatccggcatcgcagtgcgcttcccgcgcatcctgcgctggcgtcaggacaagccgatg
gccgacgccgatcatctgagcagcctgcaggcactggcgcggtga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

Download RDF

DBGET integrated database retrieval system