KEGG   Xanthomonas oryzae pv. oryzicola CFBP7342: BE73_19305
Entry
BE73_19305        CDS       T03868                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
xoz  Xanthomonas oryzae pv. oryzicola CFBP7342
Pathway
xoz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:xoz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BE73_19305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xoz03021]
    BE73_19305
   03400 DNA repair and recombination proteins [BR:xoz03400]
    BE73_19305
Enzymes [BR:xoz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BE73_19305
Transcription machinery [BR:xoz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BE73_19305
DNA repair and recombination proteins [BR:xoz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BE73_19305
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: AJQ88948
Position
complement(4058847..4063064)
AA seq 1405 aa
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
MVELHAKVKVRITQVDVDAVDGKRTSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKK
NISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEA
EVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSM
NSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTTEGLIMTPIVEGGDVVEPLKERV
LGRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARC
YGRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSV
KFNNLKSVAHASGSLVAVSRSGELSVLDGHGRERERYKLPYGTTITAKDGDAVKAGQSVA
NWDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAHAKELRPIV
RIVDGKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGL
PRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVF
EGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQ
MLRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPAKYDPVLLGITKASLATESF
ISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSE
METLSGKPAVAEPVAAVADAGADEE
NT seq 4218 nt   +upstreamnt  +downstreamnt
atgaaagacctgctcaacctcttcaatcagcagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcgtcgccggacctgattcgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccggaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atcttcggaccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcaccctggccaaggtgcgccgcgag
cgcatgggtcacatcgatctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccctcgcgcatcggtttgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctacgtcgtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaggccgtgtacgagctgctgcgcacgatcgacctgcagtcggaaatgacccgc
ctgcgcgaggaaatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggaatcgggcaaccgtccggagtggatggtcatgacc
gtgcttcccgtgctgccgccggacctgcgtccgctggtgccgctggatggcggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgc
cgcctgctcgagctcaatgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgttgctggacaacggccgtcgcggccgtgccatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggcgaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaagtgatccgcgagcatccg
gtgctgttgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtgtgtaccgccttcaacgccgac
ttcgacggcgaccagatggctgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggcctgtactacatgagccgcgcgcttgagaacaag
aagggtgaaggcatggtgttcgccaacaccagcgaagtgaagcgcgcctacgacaaccgt
atggtcgaactgcacgccaaggtcaaggtccgcatcacccaggtggacgtggacgccgtc
gatggcaagcgcaccagcggcacctcgatcgtggacaccacggtcggtcgtgcgctgctg
agcgaaatcctgcccgaaggcctgccgttccagctggccaacaccgagatgaccaagaag
aacatctcgcgtctgatcaactccagctaccgtctgctgggcttgaaggacacggtcgtg
ttcgccgacaagctgatgtacaccggctatgcctatgcaacccgtgccggcgtgtcgatc
ggtatcgacgacatgctgatccccgacgagaagaagggcatcctcaccgaggccgaagcc
gaagtgctggaaatccaggagcagtaccagtccggtctggtcaccgccggcgagcgctac
aacaaggtcgtggacatctggtcgcggaccagcgagcgcatcgccaaggcgatgatggac
accatcggtaccgaaaaggttgagaacgccaagggcgagaccatcgaccagaagtcgatg
aactcgctgtacatcatggccgactccggtgcgcgtggtagccaggcgcagatccgtcag
ctggccggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatc
aaggcgaacttccgcgaaggtctgaacgtgcaggagtacttcaactccacccacggtgcc
cgtaagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacacgtcgt
ctggtcgacgtggcgcaggacgtggtgatcaccgaaatcgattgcggcaccaccgaaggg
ttgatcatgaccccgatcgtggaaggtggcgacgtggtggagccgttgaaggagcgcgtg
ctgggccgtgttgtggccgaggacgtgtacctgccgggcaacgacgaagagccgatcgtc
acccgcaacacgctgctcgacgaagcctgggtcgccaagctcgaagacgccagcgtgcag
tcggtgaaggtgcgttcgaccatcagctgcgaatcctccttcggcgtgtgcgcacgctgc
tacggccgcgatcttgcacgtggtcaccaggtcaacatcggcgaatcggtcggcgtcatc
gccgcgcagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggt
ggtgcggcatcgcgtgcggctgcggtggacaacatcaccgtcaagaccactggttcggtg
aagttcaacaacctcaagtcggtggcgcatgccagtggctcgttggttgcggtctcgcgt
tctggcgaactgtccgtgctcgatggccatggccgcgagcgcgagcgttacaagctgccg
tacggcaccaccatcaccgccaaggacggcgatgcggtcaaggccggtcaaagcgttgcc
aactgggatccgcataaccacccgatcgtctcggaagtggccggtttcatccgtttcatc
gacttcgtcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggtctggcctcg
cgcgaaattaccgacccgaagcgtcgcggtgcgcatgccaaggaactgcgtccgatcgtg
cgtatcgtcgatggcaaggggaatgacctgacgatcccgaacacggatctgccggcgcag
tacctgctgccgccccgctccatcgtcaacctgcaggatggcgccgccgtcggcgtgggc
gacgtggtggcgaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctg
ccgcgcgttgccgatttgttcgaagcacgcaagccgaaggatccggcgatcctggccgag
cgctcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaag
gacaccgatgggtcggaacacgaagagctgatcccgaagtaccgccagatcatcgtgttc
gaaggcgagcacgtgaccaagggcgagacggtggtggacggcgagccgagcccgcaggac
atcctgcgtctgctgggtgtcgaaccgctggccgcgtacctggtcaaggaaatccaggac
gtgtaccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcactcgccag
atgctgcgcaaggtcgagatcgtcgatcagggcaacagcaaattcctcaacggcgagcag
gtcgagcgtcagcgcgtcatcgaggaaaatgcccgcctggtcaagcgcaacgaactgccg
gccaagtacgatccggtgctgctgggtatcaccaaggcgtcgcttgccaccgagtcgttc
atctcggcggcatcgttccaggagaccacccgcgtgttgaccgaggcggccgttcgcggc
acccgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcgcctgattccggcc
ggtacgggtctggcgtaccacgccggacgtcgcaaggcctcgggtttgaccgactcggaa
atggaaacgctgtcgggcaagccggcagttgccgaaccggtcgcagctgtggccgacgct
ggcgcggacgaggagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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