KEGG   Xanthomonas perforans: BJD13_08455
Entry
BJD13_08455       CDS       T04778                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
xpe  Xanthomonas perforans
Pathway
xpe03030  DNA replication
xpe03410  Base excision repair
xpe03420  Nucleotide excision repair
xpe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xpe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BJD13_08455
   03410 Base excision repair
    BJD13_08455
   03420 Nucleotide excision repair
    BJD13_08455
   03430 Mismatch repair
    BJD13_08455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:xpe03032]
    BJD13_08455
   03400 DNA repair and recombination proteins [BR:xpe03400]
    BJD13_08455
Enzymes [BR:xpe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BJD13_08455
DNA replication proteins [BR:xpe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BJD13_08455
DNA repair and recombination proteins [BR:xpe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BJD13_08455
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BJD13_08455
   MMR (mismatch excision repair)
    DNA ligase
     BJD13_08455
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BJD13_08455
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT Bep_C_terminal
Other DBs
NCBI-ProteinID: APO99100
UniProt: A0A1L5R371
Position
complement(1559367..1561868)
AA seq 833 aa
MTASPDPAQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADS
PTQRVGHLAASRFAEVRHALPMLSLGNAFSDEEVTEFVRRISERLEVKQPLFSAEPKLDG
LAISLRYENGEFVQGATRGDGATGEDVSANLRTVQAIPLRLRGEGWPQVLEVRGEVYMPR
AAFEAYNAQMRAQGGKVLANPRNGAAGSLRQLDARITAQRPLSFFAYGVGEVSEGALPQT
HSAILAQLRAWGFPVSALVEVVQGSDGLLAYYQRIGAARDGLAFDIDGVVYKLDDLAGQR
EMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLKPVHVAGVIVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEVAAVVADQRPPGTQAWQMPTQCPVCGSQIVRE
EGQAVWRCSGELTCPAQRKEAFRHFVSRRAMDVDGLGEKFIEVLVDSGLVKGVADLYLLS
VDQLLQLRLISTAESPHAFLREAREHLASGAYAQLETSVVGIGVDLAGERDVPQTWQADL
LRAGLPRFDWNRKKIATKWAENLIEAIETSRDTTLERFLFALGIEHVGESTAKALSAWFG
DLELIRHLPWPLFKRVPDIGGEVARSLGHFFDQAGNQQAIDDLLQRGVRIGDTHPPSPKL
REALSFASVLEDMDIPKVTPVRAQQLAAAVDSFAALRTAGADALQQAGVPAPVVAALLQW
LDRPENTALANAAQQAMETVLARLPQADALQTGPLDGQTVVITGTLAALTRDAAKQRLEA
LGAKVAGSVSKKTAFLVAGEEAGSKLDKAQSLGVEIWDEARLLAFLGDHGQQP
NT seq 2502 nt   +upstreamnt  +downstreamnt
atgactgccagcccggatcccgctcagcgcatcgatgccctgcgccgtcgcatcgaagac
gccaactaccggtatcacgtgctcgacgagccgcagatggccgacgccgattacgacaag
ttgatgcgcgagctggaggccttggagcgcgcgcacccggaattggccagtgccgattcg
ccaacccagcgcgtcggccatctggccgcctcgcgatttgccgaagtgcggcatgccttg
ccgatgctgtcgttgggcaatgccttcagcgatgaggaagtgaccgagttcgtgcgccgc
atcagcgagcggctggaggtcaagcaaccgctgttttccgccgaacccaagctcgatggc
ctggcgatcagcctgcgctacgagaatggcgagttcgtgcagggcgccacgcgcggcgat
ggcgccaccggcgaggatgtcagcgccaacctgcgcaccgtccaggcgattccattgcgg
ctgcgcggcgagggctggccgcaggtgctggaagtgcgcggcgaggtctatatgccgcgc
gccgcgttcgaagcctacaacgcacagatgcgtgcgcagggcggcaaggtgctggccaac
ccgcgcaatggcgcggccggctcgctgcgccagctggatgcgcgcatcaccgcgcagcgc
ccgctgagcttctttgcctacggcgtcggcgaagtgagcgaaggcgcattgccgcagacc
cattcggcgatcctggcgcaactgcgtgcgtggggctttccggtcagcgcgctggtcgag
gtggtgcagggcagcgatggtctgctggcgtattaccagcgcatcggtgccgcacgcgat
gggctggccttcgatatcgatggcgtggtgtacaagctcgacgatctggccgggcaacgc
gaaatgggcttcgtctcgcgcgcgccgcgttgggcgattgcgcacaagttccccgcacag
gagcagtccaccacggtggaggcgatcgagatccagatcggccgcaccggtgcggccacg
ccggtggcgcgcctgaagccggtgcatgtggccggggtgatcgtcaccaatgccacgctg
cacaatgccgaccagatcgcgcggctggatgtgcgcgtgggcgacacggtgatcgtgcgc
cgcgccggggacgtcattcctgaagtggccgctgtggtggccgaccagcgcccgcccggt
acccaggcctggcagatgccgacgcaatgcccggtgtgcggttcgcagatcgtgcgcgaa
gaaggtcaggcggtctggcgctgttccggcgagttgacctgcccggcgcagcgcaaggag
gcgttccggcattttgtctcgcggcgcgcgatggatgtggacggcctgggcgaaaaattc
atcgaagtgctggtcgacagtggcctggtgaaaggcgtggccgacctgtatctgctaagc
gtggatcagctgctgcaattgcgcctgatcagcacggccgagagtccgcacgcgttcttg
cgcgaggcgcgcgagcatctggccagcggcgcatatgcgcagctggaaaccagcgtggtc
ggcatcggcgtggacctggccggcgagcgcgacgtgccgcagacctggcaggccgatctg
ctgcgcgcaggcttgccgcgcttcgactggaaccgcaagaagatcgccaccaagtgggcg
gagaatctgatcgaggcgatcgaaacatcgcgcgacaccacgctggagcgtttcctgttt
gcgctgggtatcgagcatgtgggcgaaagcacggccaaggcgttgtcggcctggttcggc
gatctggaattgatccggcatctgccgtggccgctgttcaagcgcgtgccggacatcggc
ggcgaagtggcgcgttcgcttgggcacttcttcgatcaggccggcaatcagcaggccatc
gatgacctgctgcagcgtggcgtgcgcatcggcgatacgcatccaccttcgcccaagctg
cgcgaggcgttgagttttgccagcgtgctggaagacatggacattcccaaggtgacgccg
gtgcgcgcgcagcagcttgccgcggcggtggattcgttcgctgcgttgcgcacggccggt
gccgatgccttgcagcaagctggcgttccggcacccgtggtggccgcgttgctgcaatgg
ctggatcgccccgaaaacactgcgctcgcgaatgcggcgcagcaggcgatggaaaccgtg
ctggcgcgtctgccccaagccgatgcgctgcagaccggcccgctcgatggccagaccgtg
gtcatcaccgggaccctggctgcgctgacacgcgatgcggccaaacagcggctcgaagca
ttgggcgccaaggtcgccggtagcgtctccaagaagacggcatttctggtggccggcgaa
gaagccggttccaagctcgacaaggcgcagtcgctgggcgtggagatctgggacgaagcg
cgtctgctggccttcctgggcgaccacggccaacagccgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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