KEGG   Xenopus tropicalis (tropical clawed frog): 100124870
Entry
100124870         CDS       T01011                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510  Focal adhesion
xtr04512  ECM-receptor interaction
xtr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100124870 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100124870 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100124870 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xtr04147]
    100124870 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:xtr00536]
    100124870 (col4a1)
Exosome [BR:xtr04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   100124870 (col4a1)
Glycosaminoglycan binding proteins [BR:xtr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100124870 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 100124870
NCBI-ProteinID: XP_002933064
Xenbase: XB-GENE-6451485
UniProt: A0A6I8Q7J4
Position
2:117308323..117410626
AA seq 1669 aa
MSWRLLCALLILLGLIGTSDSAACSGCGTSKCDCSGVKGQKGERGLPGLPGLMGFPGLQG
PEGPPGPLGQKGDTGEPGLPGTKGTRGPPGSHGFPGNPGLPGIPGQDGPPGPSGIPGCNG
TKGDRGPLGPPGLPGIIGYPGSPGQPGPKGEPGDITGIDVSMIKGEKGFPGINGIPGTPG
LPGTPGPMGPIGPPGSAGPPGSHGAPGPKGEMGISFYGPKGERGDRGPPGAPCKPSTEPQ
GSENEQVYYGEKGEKGMPGENGERGQPGQSFKGEKGEPGPLGPRGKPGKDGDQGEKGLQG
VPGIPGFPGPPGFGGTKGEKGESGPQGPPGIVVSNGEIEVCEKGDRGLPGFPGSKGDKGL
KGAQGFPGIPGSPGVPLPGSTGPPGFPGERGEKGQHGLPGLALQGPKGRDGFPGPPGLPG
PPGAIDTSIECKSGQPGDPGLPGNPGQNGFQGERGQKGDKGDACPSCDLVPPGLPGPPGP
QGPPGDQGASGVPGIKGDRGHPGYDGPPGAPGPQGSAGLMGSPGAKGEPGEVFFEPRLKG
DKGESGLPGHPGAPGREGRPGIDGQQGLPGSKGVAGTIGAKGEQGLPGDRGSPGNPGERG
FPGPAGTGTSGLPGEKGEPGVPGFVGIPGTPGAKGEPGKAIIKTGPPGPMGGAGIPGFPG
DQGEKGSPGHPGRPGSQGEKGEPGLPGVGYPGPSGEKGFQGMPGTPGQAGFPGPQGVDGL
PGLRGDPGPKGEPGLGLPGPKGVQGPPGPVGIPGDKGNPGASGVPGEQGFSGVPGHPGHK
GEAGIVGVPGIQGPPGVPGMGPKGQQGSSGPQGLSGFPGPAGVKGERGYAGFPGLDMPGP
KGDKGNIGSPGPTGATGIPGQPGAPGKEGLPGFPGPKGEMGVMGMPGSIGQPGAPGSPGA
LGEKGDAGPFGPPGTSGYPGTKGEKGEEGLRGEPGKMSETDKETMKGSKGEKGERGEIGI
SGEKGSLGDFGSPGMPGKDGQQGVQGESGPKGEKGSQGIKGSQGLQGQKGSIGEMGLPGP
TGEKGQHGISGSPGSPGLGGIKGEKGLKGEVGLPGIGIPGVPGVKGDAGRDGPHGLPGER
GDKGDVGIPGMPGFPGSKGATGHAGIPGSPGLPGEKGAKGTHGLVGIPGQKGLTGDSGVQ
GPPGHSGEKGEPGYDGIPGSPGEKGEAGIPGRGLPGHPGEHGEKGSKGDIGFPGAPGISG
VPGIKGDQGLPGFQGPQGPPGFPGPSGIPMEGPKGEKGQPGQAGYPGSPGPVGLPGHTGQ
DGLKGEKGERGWPGALGFQGIKGDTGNQGPSGDAGPSGITGQKGDTGPPGIPGFPGLKGS
LGISGEKGDRGDQGITGPKGDLGPPGPAGTHTVTKGESGEPGPQGPSGPRGIQGLPGPKG
DKGVTGASGLPGPSGIPGIHGTPGQKGETGPSGPTGQTGYPGPPGSDGLPGPIGLPGSPS
MAHGFLVTRHSQTTETPQCPFGTTAVYSGYSLLYVQGNERAHGQDLGASGSCLRKFSTMP
FLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDGIKPFISRCTVCEVPAMVMAVH
SQTIQIPQCPDGWISLWIGYSFVMQTSAGAEGSGQALASPGSCLEEFRSVPFIECHGRGT
CNYYANTYSFWLATIEKNEMFKKPTPSTLKAGDLRTHVSRCQVCMRRTS
NT seq 5010 nt   +upstreamnt  +downstreamnt
atgagctggaggctgctgtgtgcgctgctcatactgttagggctcatcggtaccagtgat
tctgcggcctgcagtggttgtggaactagcaaatgtgactgcagtggagtaaaagggcaa
aaaggtgagagaggtctgcctggtttacctggattaatgggctttcctggacttcaagga
ccagaaggaccaccgggaccattgggtcagaagggtgacacaggggaaccaggtcttcct
ggcacaaaaggaaccagaggtccacctggttcgcatggattcccaggaaatccaggtctt
cctggtatacctgggcaagatggtccaccaggtccatctgggattccagggtgtaatggc
actaagggtgacagaggacccctcggaccacctgggcttccaggaataattggttatcct
ggatcacctgggcaaccagggccaaaaggagaacctggagatattactggaatcgatgta
tctatgatcaaaggagaaaaaggttttcctggaattaacggaataccgggtacacctgga
ttgccagggacaccaggacctatgggaccaattgggccaccaggatctgcaggacctcct
ggttcacatggtgccccaggaccaaagggtgaaatgggcataagtttctatggaccaaaa
ggggagaggggtgatcggggacctccaggtgctccttgcaagccttccactgaacctcaa
ggaagtgagaatgagcaagtatattacggagaaaagggagaaaagggtatgcctggtgaa
aacggagaacgtggacaaccaggacaaagctttaagggtgaaaaaggagagcctggccca
ttagggcctcgaggcaaacctgggaaagacggtgaccagggtgaaaagggacttcaagga
gttccaggtattccaggatttccaggacctccaggatttggtggaacaaaaggagaaaag
ggtgaatccggaccacaagggcctccaggaattgtagtatcgaatggtgaaatagaagtt
tgtgaaaaaggggatcgcggactacctggttttcctggcagcaagggagataaaggactt
aaaggtgcacagggatttccaggcataccaggatccccaggggttcctcttcctggatct
actgggccaccaggttttcctggtgagagaggtgaaaagggtcaacatggattgccagga
ctagcccttcaagggccaaaaggcagagatgggtttcctggtcctcctggattacctggg
ccaccaggtgcaatagatacaagcatagaatgtaaatctgggcagcccggagaccctgga
ttacctggcaatcctggacaaaatggattccaaggggaaagagggcagaaaggtgataaa
ggtgacgcatgtccttcatgcgatttagttccaccagggcttcctggaccaccaggtcct
caaggacctcctggagatcaaggtgcttctggtgtaccaggaatcaaaggagacagaggt
cacccaggctatgatgggccaccaggggctccgggacctcaaggtagtgcaggcttaatg
ggaagcccgggagcaaaaggagagcctggggaggtgttctttgagccaaggctaaaaggg
gataaaggagagtcaggattacctggacatccgggagcacctggaagagagggaagacct
ggcattgatgggcaacaaggactaccaggttcaaaaggtgtagcgggaacaataggagca
aaaggtgaacaaggacttcctggtgataggggatctcctggaaaccctggagaacgagga
tttccaggaccagctggcacaggaacttctggactacctggtgaaaaaggagaacctggc
gtacctggatttgtcggcatacctggtacacctggtgcaaaaggtgaacctggaaaagct
ataattaaaactgggccaccgggaccaatgggcggtgcaggcattcctggttttccagga
gatcaaggtgaaaaaggatctccaggacatcctggaaggccaggatcccagggagagaaa
ggagaacctggtttacctggtgtagggtatcctgggccttctggtgaaaaaggttttcaa
ggaatgccaggcacacctggtcaagctggttttcccggtccccagggagttgatggatta
ccaggtttaagaggggaccctggaccaaaaggggaaccaggtttaggtcttccgggtcca
aaaggagtgcaaggaccacctggacctgttggaattcctggagataaaggaaatcctgga
gcatcaggtgtgccaggagagcagggattttcaggtgttcctggccatccaggacacaaa
ggtgaagctggcattgtgggtgttccaggaattcaaggtcctccaggtgtacctggcatg
ggacctaaggggcagcaaggatcttcgggaccacaaggtctttcaggatttccaggacct
gcgggagttaaaggagaacgaggatatgctggtttcccaggattagatatgccaggacca
aagggagacaaagggaatataggatcaccaggacccacgggtgctacaggaattccaggc
cagccaggtgcaccagggaaagagggtcttccaggttttccaggaccaaagggagaaatg
ggtgtcatgggaatgccaggaagcattggacaaccaggagccccaggcagcccaggagca
ttaggtgaaaaaggtgatgctggtccttttgggcctcctggcacatctggatatccaggg
acaaaaggtgaaaagggtgaagaaggattgcgtggtgaacctggtaaaatgtcagaaact
gacaaggaaactatgaagggtagcaaaggagaaaagggagaaagaggtgagattggcatc
tctggagaaaagggatctttaggtgattttggcagcccaggaatgcccggaaaagatgga
cagcaaggagtacaaggagagtcaggacctaaaggagaaaagggttcacaaggaataaaa
ggaagccaaggacttcaaggacaaaagggatctataggagagatgggtttgccagggcct
actggagaaaagggtcaacacggtatttcaggatccccaggaagccctggtttgggagga
ataaagggagaaaagggactaaagggtgaagtgggtcttccaggtatcggcattccaggg
gtacctggtgtcaagggagatgctggaagagatgggcctcatgggttaccaggtgaaagg
ggagataaaggagatgttggtattccaggaatgccaggatttccaggttccaaaggagcc
acaggccatgcaggcatcccaggtagcccaggacttccaggagaaaaaggtgccaaaggg
acccatggattggtgggcattccaggccaaaaaggactaacaggtgattctggtgttcaa
ggtccccctggccattctggagagaaaggtgaacctggttatgatggaattccaggatca
cctggtgagaagggagaagcaggcatacctggtagggggcttccaggacatccaggagaa
catggagaaaaaggttccaaaggtgacattggcttccccggtgcacctggaatttctggt
gtcccaggtatcaaaggcgatcaaggattgcctggtttccagggccctcaagggccccct
gggttccctgggccttcaggaataccaatggaaggccctaaaggtgaaaaaggacagcca
ggtcaagcaggatatccaggttctccaggccctgttggacttccaggtcatactggacag
gatggtttaaaaggtgaaaaaggagaaagaggatggcctggagcacttggttttcaaggg
attaaaggagacactggaaatcaaggaccatcaggagatgcaggcccttcaggtattact
ggtcaaaaaggagatacaggacctccaggaattccagggtttccaggtttaaaaggttct
ttaggtatatctggagaaaaaggtgatcgtggtgaccaagggataactggacccaaaggt
gacttaggtcctcctggacctgctggtacacacactgtcactaaaggagaatccggagaa
cctggacctcagggtccttctggtcctagaggaattcaaggattgcctggtccaaaaggc
gacaaaggtgtaactggtgcttctgggctgcctggaccaagtggtataccagggatacat
ggcaccccaggacaaaaaggagagactggaccaagtggtccaacaggtcagacaggatac
cctggccccccaggcagtgatggcttgcctggacctataggcttgcctggatcaccatct
atggctcatggttttcttgttacaagacacagtcagacaacggaaacaccacaatgtcct
tttggaacaactgctgtttatagtggatattcactgctctatgtgcaaggcaatgaaaga
gcacatggtcaggacttgggggcttctgggagttgtcttcgtaaatttagcacaatgcct
ttcctcttctgcaatattaataatgtctgcaactttgcttcaaggaatgactactcttat
tggctttccaccccagaaccaatgccaatgagcatggctcctatcacaggggacggtatt
aaacctttcatcagtaggtgcactgtgtgtgaggttcctgccatggtgatggctgttcat
agtcaaactattcagatacctcagtgcccagatggatggatttcactatggattgggtat
tcttttgtgatgcaaactagtgctggtgctgaaggctcagggcaagctctggcatcccca
ggatcctgtctagaagagttcaggagtgtaccatttattgagtgccatgggcgtggaacc
tgtaactactatgccaatacatacagcttctggcttgcaacaatagagaagaatgaaatg
tttaaaaaaccaacaccttcaacgctaaaggctggagatctacgcacacatgttagccgc
tgccaagtttgcatgagaaggacatcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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