KEGG   Xenopus tropicalis (tropical clawed frog): 100158551
Entry
100158551         CDS       T01011                                 
Symbol
rexo5
Name
(RefSeq) putative RNA exonuclease NEF-sp
  KO
K14570  RNA exonuclease [EC:3.1.-.-]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    100158551 (rexo5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:xtr03009]
    100158551 (rexo5)
Ribosome biogenesis [BR:xtr03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    100158551 (rexo5)
SSDB
Motif
Pfam: RRM_1 RNase_T DNA_pol_A_exo1
Other DBs
NCBI-GeneID: 100158551
NCBI-ProteinID: NP_001121457
Xenbase: XB-GENE-980884
UniProt: B2GUC2
Position
9:24427744..24449308
AA seq 784 aa
MAEEPLMNPSKRRNCTTEDEREPKKKRVDSEHQSINGSTICKLKKSPRLSTALFRDNCAI
QHQQIHKLLKYACLGKGSRSAQPSWCHIQHQKRLQSVVIIVLQDLAQLHFYQFYLHFPYL
RKLFKHRFSMPPPPSDFIAALIGAEKNGTSDIKKQEFRSLQANFSLKDPAETACLSGEIG
ETFKHDPIVLKYGTEQLGLTRYLLSQEEMRKNKYPLVGSPDSIDYVNSGCSREITDDSPL
FGLDCEMCLTDKGSELTRISLVDASGSCIMDELVKPDNTIRDYMTRYSGITRKLLLPVKT
KLKDVQQKLKSVLPPDAVLVGHSLDNDLRALQMIHTSVIDTALLFAREYGRKFRLKFLAQ
AVLGREIQTDDVMGHCPAEDARAALNLAQYFIQHGPKKVAQLYLHAVFRRINSPNGTLPA
QEETLPTKQNGFLFPSVATPIKQRSEEPHSLLESLNSYGRKIIYMGRINGMKDSVSSKLL
ENIRCSSEEEVLKNACSLPQLASIGIVTFSPNNGYSRGPNEMHKRLRSKFSDMMTVFAGP
FEKSFCLQSVRRVFRTCGPIKSLKVLSQTYQPYISVEYIILEAAQLAVETLDGAHIDGHC
IKVQRLVTEQTLDCQLLLKAMEEDPENRDVIYVSGFTKSLTEEFLQRRFGQFSDIKAIFL
PICPLNGKPAKYCFLKFRQSQSATAAIDHITGEGELRCRRALTACHFHQWLQTGEPCAPR
EQQQQVLPEEDALCDIMESLDSNVMQVYENLPENTLCLVLFPGANSSCGSVPGFGLMGIK
ASCG
NT seq 2355 nt   +upstreamnt  +downstreamnt
atggctgaggagcctttaatgaatcccagcaaaagacgaaactgtacaactgaggatgaa
agggaacctaaaaagaagagagtggactctgaacaccaaagcattaatggctcgaccata
tgcaaactcaagaagtcgcccagactttccacagcattgtttcgggataactgtgccatc
cagcaccaacaaatccacaagcttcttaaatatgcctgtctaggaaaaggttcccgttca
gcccagccaagctggtgccacattcaacatcagaaacgccttcaaagtgttgttattatt
gtactgcaggatctcgctcagctccatttttatcagttttacttgcactttccctatctt
aggaagctgtttaaacacagattcagcatgcctcctcctccttctgattttattgctgct
ttgattggcgcagaaaagaatggcacatctgacataaagaaacaagagttcagatctctt
caagccaacttcagcctaaaagatcctgctgaaacagcttgcttatctggtgaaatcgga
gagacttttaaacatgaccccatcgtactgaaatatggaactgagcagctaggcctgacc
aggtatctgctttctcaggaggagatgaggaaaaataagtatcctttagtaggctctccc
gattcaatagattatgtgaactctggctgctcaagggagataaccgatgacagccctctg
tttggattagactgtgaaatgtgcttgacggataaaggaagtgaactcactcgaatctca
ctggtagatgccagtggttcctgcattatggatgagcttgtcaaaccggacaatactatt
agggattatatgaccaggtactcaggaattacaagaaagctgctgcttccagtgaaaact
aaattaaaggacgtgcagcaaaagctcaagtcagttctccctcctgatgctgttctagtt
ggtcactcactggataatgacttacgggctttacagatgatccataccagtgttattgat
acagcgttgctatttgcaagagaatatggtagaaaattcaggctcaagttcttggctcaa
gcagttctggggagggagattcagactgacgatgtaatgggtcactgtccggctgaagat
gcaagagctgcattaaacttggctcagtattttatccagcatgggcctaaaaaggttgcg
caactctatctgcacgccgtctttagacgcataaacagcccaaacggaactctgccagct
caggaggagactttgccaaccaaacagaatgggttcctcttcccatcggtcgcaacccca
atcaaacaacgctcagaagagcctcacagtctgttggaatcgctgaactcttatggaagg
aagatcatttacatgggcagaatcaatggcatgaaagattcagtttcttcaaaactactg
gagaatatcaggtgttcatccgaggaagaggttctgaaaaatgcctgcagtttgccccaa
ctggcctccatcggcattgttacattttcccccaacaatggttacagcagaggcccaaat
gagatgcacaaaaggttgagaagtaagttttcggacatgatgactgtttttgctggacca
tttgagaagtctttttgcttacaatctgtaaggagggtgttccggacctgcggcccaatc
aagtcattaaaagtcttgtcccagacgtaccagccatatatcagtgtggagtacatcata
ctggaagctgctcagcttgctgtggaaaccttggatggtgcacacattgatggccattgt
atcaaggtgcagaggctggtcacggagcaaacactcgactgccagctgcttctgaaggca
atggaagaagatccggagaacagagatgttatttatgtttcgggttttacgaagtcccta
actgaggaatttctccagcggcgctttggccaattcagtgatattaaagccatttttctg
cccatctgtcctctgaatgggaaacctgcaaaatactgctttttgaaattccggcagtcc
cagagcgccactgcggcaatcgatcacatcacaggagaaggtgagctccggtgtcgaaga
gcactcacagcctgccacttccatcagtggttacaaacaggggagccatgtgcccctcgg
gagcagcagcagcaagttcttcctgaggaagatgccctgtgtgacatcatggagagcttg
gatagtaacgttatgcaggtttatgagaaccttccagaaaacactctctgccttgttctt
ttccctggtgcaaacagttcctgtggatctgtccctggctttggactgatgggaataaaa
gcatcgtgtggatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system