KEGG   Xenopus tropicalis (western clawed frog): 100170153Help
Entry
100170153         CDS       T01011                                 

Gene name
thbs1, thbs, thbs-1, tsp, tsp-1, tsp1
Definition
(RefSeq) thrombospondin 1
  KO
K16857  
thrombospondin 1
Organism
xtr  Xenopus tropicalis (western clawed frog)
Pathway
p53 signaling pathway
Phagosome
TGF-beta signaling pathway
Focal adhesion
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:xtr00001]
 Environmental Information Processing
  Signal transduction
   04350 TGF-beta signaling pathway
    100170153 (thbs1)
  Signaling molecules and interaction
   04512 ECM-receptor interaction
    100170153 (thbs1)
 Cellular Processes
  Transport and catabolism
   04145 Phagosome
    100170153 (thbs1)
  Cell growth and death
   04115 p53 signaling pathway
    100170153 (thbs1)
  Cellular community - eukaryotes
   04510 Focal adhesion
    100170153 (thbs1)
Membrane trafficking [BR:xtr04131]
 Endocytosis
  Phagocytosis
   Opsonins
    100170153 (thbs1)
Cell adhesion molecules and their ligands [BR:xtr04516]
 2. Integrin Family
  Beta1 integrins
   VLA-3
    ITGB1; integrin beta 1 [KO:K05719]
     100170153 (thbs1)
Glycosaminoglycan binding proteins [BR:xtr00536]
 Heparan sulfate/Haparin
  Extracellular matrix molecules (General comment) Storage depot, cell adhesion and motility, ECM/barrier formation
   100170153 (thbs1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
Xenbase: 
Position
8
AA seq 1176 aa AA seqDB search
MGMMKGIFLLLMLAVPQTYQAAESGNDDNSVFDLFELTGYNRKTGSRKPEGLHLVKGPDP
SSPAYRIEDADLIPPLPEVKFQDLLDAIRADRGFILLATLRQAKKSRGALLSVERKDGAG
HIFSLISNGRAGTLDLSLSGERKQQVVSVEDALLATGHWKNITLFVQDDRAQLYVGCDKM
ENAELDVPIQKIFTEDLASKAHLRVAKGGVKDNFQGVLQNVRFVFGTTLEAILRNKGCSS
MTNSVITLDNPVNGSSPAIRTNYIGHKTKDLHAVCGISCDDLSKLFAEMKGLRTLVTSLQ
DQVTKETERNELIAQRVTMTPGACLHNGVLHKNRDEWTVDSCTECTCQNSATICRKVSCP
LMPCTNATIPDGECCPRCWPSDSADDDWSPWSDWTPCSVTCGHGIQQRGRSCDSLNNRCE
GSSVQTRSCHIQECDKRFKQDGGWSHWSPWSSCSVTCGSGQITRIRLCNSPVPQLNGKPC
EGEGRENKPCQKDPCPINGQWGPWSLWDTCTVTCGGGMMKRERLCNNPKPQYGGKECIGD
PTDSQICNKQDCPIDGCLSNPCFAGVKCTSFIDGSWKCGSCPPGYRGNGITCKDIDECKE
VPDACFSLNGVHRCENTEPGYNCLPCPPRFTGTQPFGKGIDEAKANKQVCKPRNPCADGT
HDCHRNARCIYLGHYSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLTCVANATYHCM
KDNCPNLPNSGQEDYDKDGMGDACDKDDDNDGILDDRDNCQFVYNPAQYDYDRDDVGDRC
DNCPYNHNPDQADTDRNGEGDACAVDIDGDGILNERDNCPYVYNVDQRDTDKDGVGDQCD
NCPLEHNPEQTDSDSDLIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDAC
DHDDDNDGVPDDKDNCRLVPNPDQTDSNGDGRGDACQYDFDDDNIPDAEDVCPENVEIST
TDFRKFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFI
NTERDDDYAGFVFGYQSSSRFYVVMWKQITQTYWDTTPTVAQGYSGLSIKVVNSTSGPGE
HLRNALWHTGNTPGQVRTLWHDPHQIGWKDFTAYRWHLTHRPKTGFIRVVMYEGKKVMAD
SGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDS
NT seq 3531 nt NT seq  +upstreamnt  +downstreamnt
atggggatgatgaagggcattttcctactgttgatgttggccgtgcctcaaacatatcaa
gcagcagaatctgggaatgatgataacagtgtatttgatctgtttgagttaacgggatac
aaccgcaaaactggttctcgtaagcctgaaggactccatttagtaaagggacctgaccct
tcaagcccagcttatagaattgaagatgctgacttgatcccaccactgccagaagtcaaa
tttcaagatttgctggatgcaatacgtgctgatagggggttcattttgttggcgactctg
cgtcaagcaaagaaaagtcgaggggcacttctgtctgtggagagaaaagatggcgcaggg
cacatcttcagtctgatctccaatggccgggctggaaccctagatttaagtttaagtgga
gaaaggaagcagcaggtggtgtctgtagaagatgctctcctagctactggccactggaag
aacatcaccctctttgtacaagatgaccgtgcacagctctatgtaggatgtgacaagatg
gaaaatgctgagctagatgtgccaatacagaaaatatttactgaggacctggcaagcaag
gctcatcttcgagtagcaaagggaggagtaaaggacaactttcagggagtccttcagaat
gtacgctttgtgtttggaaccacattggaagctattctgagaaacaaaggctgctcaagc
atgacaaactcagtcatcactttggacaacccagtgaacggctcaagcccagccatccga
acgaattacattggccacaaaacaaaggacctgcatgctgtgtgtggcatttcctgcgat
gatctgtccaaactgtttgcagaaatgaaaggcttacggacgctggtcacatctctccag
gaccaagtcaccaaagagacggagaggaatgaacttattgctcagcgagtaacaatgacg
ccaggtgcttgtctccacaatggagtcttgcataagaacagagatgagtggaccgttgac
agctgcactgaatgcacatgtcagaactcagctaccatatgccgtaaggtatcttgccct
ctgatgccctgtaccaatgccaccattccagatggggaatgctgtcccagatgttggcca
agcgactcagctgatgatgattggtctccatggtcagattggacaccttgctctgtgaca
tgtggacatggcatccagcagagaggacgttcctgcgacagccttaataaccgctgcgaa
ggttcttctgtacagacacgatcttgccatatccaggaatgtgacaagagatttaagcaa
gatggtggatggagccactggtcaccttggtcatcatgctcagttacctgcggaagtggt
caaatcaccagaatccgtctctgcaactcccctgttcctcagctgaatggaaagccatgc
gaaggggaaggaagggagaacaagccatgtcagaaagacccatgcccaattaatggtcag
tggggtccttggtcactgtgggacacatgcactgttacttgcggtggtggaatgatgaag
agggagcgtctctgcaataaccccaaacctcagtatgggggtaaagagtgtattggagat
cctactgattctcagatctgcaacaaacaggactgtcccatagatggatgtctctctaac
ccttgctttgctggagtcaaatgcaccagcttcattgatggatcttggaaatgtggttcc
tgcccaccagggtacagaggaaatggaataacatgcaaagatattgatgagtgcaaagag
gtgcctgatgcctgcttcagcctgaatggagttcatagatgtgagaatacagaaccagga
tataattgtctcccatgccctcctcggttcacaggaactcagccatttggcaaaggcatt
gatgaagctaaagccaataagcaggtttgcaagcctcgcaacccatgcgccgatggtacc
cacgactgtcacaggaacgccagatgtatctaccttggacactacagcgaccccatgtac
cgatgtgagtgcaaacctggatacgcaggaaatggaatcatttgtggcgaagacacagat
ttggatggctggccaaacgagaacctcacatgtgttgctaatgctacctatcactgcatg
aaagataactgccccaacctccccaactcaggccaggaagactatgataaggatggaatg
ggagatgcctgcgataaagacgatgacaatgatggaatcctagatgacagggacaactgt
cagtttgtgtataacccagcacagtacgactatgatcgtgatgacgtgggagaccggtgt
gacaactgcccttacaaccacaacccagaccaggctgacacagaccgcaatggagaagga
gatgcctgtgctgtggacattgatggagatgggatcctaaacgagagggataactgcccc
tatgtgtacaatgtcgaccagagagacacagataaggatggtgttggagaccaatgtgat
aactgcccactggaacacaatccagaacagactgactctgattctgacctcattggcgat
aagtgtgacaacaaccaagatatagatgaggatgggcatcaaaataacctagataactgc
ccctacatccccaatgccaaccaagcagatcatgataaggatggcaagggtgatgcatgt
gaccatgatgatgacaatgatggtgttcctgatgacaaagataactgccgattggtccct
aacccagaccaaacagattctaatggtgatggccgtggagatgcttgccaatatgacttt
gatgatgataacatacccgatgcagaagatgtttgcccagagaatgtggaaatcagcact
actgacttccgtaaattccagatggtgcctttggatcccaaagggacatcacagattgat
cctaactgggtggtgagacaccaaggcaaagaactggttcagactgttaactgtgatcct
ggaattgcagttggttttgacgagttcagtgctgttgacttcagtggcacatttttcatc
aacaccgagagagatgacgattatgccggctttgtgtttggataccaatccagcagcagg
ttttacgtagtcatgtggaagcaaatcactcagacatactgggacacaactcccactgta
gctcagggctactctggcctctcaatcaaggttgtgaactctaccagcggaccaggggag
cacctacgaaatgcactgtggcacacaggaaacacccctgggcaggttcgcaccttgtgg
catgatcctcaccagatcggctggaaagattttacagcttacagatggcacctgacccac
agaccaaagaccggtttcattagagtcgtcatgtatgaaggcaagaaagttatggctgac
tcaggaccaatctatgataaaacatatgctggaggaagattaggattattcgtcttctca
caagagatggtcttcttttctgatctcaaatacgagtgcagagactcttaa

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