KEGG   Xenopus tropicalis (tropical clawed frog): 100485735
Entry
100485735         CDS       T01011                                 
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03420  Nucleotide excision repair
xtr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    100485735 (ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    100485735 (ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xtr04121]
    100485735 (ddb1)
   03400 DNA repair and recombination proteins [BR:xtr03400]
    100485735 (ddb1)
Ubiquitin system [BR:xtr04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     100485735 (ddb1)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      100485735 (ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      100485735 (ddb1)
SSDB
Motif
Pfam: MMS1_N CPSF_A Beta_propel
Other DBs
NCBI-GeneID: 100485735
NCBI-ProteinID: XP_002937687
Xenbase: XB-GENE-967908
UniProt: A0A6I8QS73
Position
4:24036047..24058109
AA seq 1140 aa
MSYNYVVTAQKPTAVNACVTGHFTSEDDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPDCRMIGLRLYDGLFKVIPLERDNKELKAFNIRLEELHVIDVKFLYSCQAPTICF
VYQDPQGRHVKTYEVSLREKEFSKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDVNGSRYLLGDMEGRLFMLLLEKEEQMDGSVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLTAESNEQGSYVVVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRVAADRD
TDDTLVLSFVGQTRVLTLTGEEVEETDLAGFVDDQQTFFCGNVAHQQLIQITSASVRLVA
QNPQSLVSEWKEPQGRKVSVCSCNSRQVLLAVGRVLYYLEIHPGELRQISCTEMEHEVAC
LDVTPLGGSDTLSSLCAIGLWTDISARILSLPGFQLLHKEMLGGEIIPRSILMTSFESSH
YLLCALGDGALFYFSLNTDTGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGSSPLRPSASTQALSSSVSCSKLFSGSTSPHET
SFGEEVEVHNLLIIDQHTFEVLHTHQFLQNEYTLSLVSCKLGKDPTTYFVVGTAMVYPDE
AEPKQGRIVVFQYNDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
SPPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVIANLQIDDGSGMKRETTVDDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtgacagctcagaaacccacagcggtcaatgcctgtgtgaca
gggcacttcacatctgaagatgacctgaatcttctgatagcaaaaaatacccggctagag
atctatgtggtaacaccagaaggtctgaggccagtcaaggaggttggaatgtatggcaaa
attgcagtgatggagctcttcaggcctaagggtgagagtaaagacttgctatttatactg
accgctaaatacaatgcatgtattttggagtacaaacagaacggggacagcattgatatc
ataactcgtgcacatggcaacgtacaggatcgcattggccgcccttctgaaactggcatc
attgggatcattgacccggactgcagaatgattggtcttcgtctttatgatgggctgttc
aaagtgataccattagagcgggacaataaagagttgaaggcctttaacattcgcttggag
gagctgcatgtcattgatgtgaagttcctgtatagttgtcaggcccccactatttgcttt
gtgtatcaggacccccaaggcagacatgttaagacgtatgaagtttctctgagggagaag
gagttcagcaagggaccctggaaacaagaaaatgtagaggcagaagcatctatggtcatt
gcagttccagagcctttcgggggtgccattatcattggccaagagtccattacctaccac
aatggagacaagtacctagcaatagcacctcccattatcaagcaaagcaccattgtgtgc
cataaccgagtagatgtcaatggttcgcggtatctgctgggtgacatggagggccgcctg
tttatgcttttattggagaaggaggagcagatggatggaagtgtcacactgaaggatctg
cgtgtggaattactaggagagacttccattgctgaatgtctgacttatttagacaatgga
gttgtgtttgtgggctctcgtctcggagattcccagctggtgaagcttacagcagagagc
aacgaacagggatcatacgttgttgttatggaaactttcacaaacttgggccccattgta
gacatgtgtgttgtggatctggagaggcaaggacaggggcagttagtgacctgctctgga
gcctttaaggagggttctttaaggattatccgaaatggaattgggatccacgaacatgcc
agtatcgaccttcctgggattaaaggtctttggcctctcagagttgctgctgatcgtgac
acagatgacacattggttttgtcttttgtgggacaaacaagagtcctcacccttacagga
gaagaagtcgaggaaacagacttggctggtttcgttgatgatcagcagacatttttctgt
gggaatgttgcacatcagcagcttattcagatcacatcagcctcagtacggctggtagct
caaaacccacagagcttggtgagtgaatggaaagaaccacagggccgtaaggttagcgtc
tgctcctgcaacagtcgacaggtgctgcttgctgtgggtagagttttgtattacttggag
atccaccctggagaactgcgacagatcagctgcacagaaatggagcatgaggtggcctgt
ctggatgtcacgcctctcggaggaagcgatactctttcctctctttgtgccatagggctt
tggactgacatctctgcacggatcctcagcctgccaggcttccagctgttgcacaaggag
atgctgggtggagaaataatcccacgttccatcctcatgacttcgttcgaaagcagtcac
tacttgctttgtgcacttggagatggtgccctgttctacttcagtctaaacacagacaca
ggacttctgagcgataggaaaaaggttactttgggaacacagcccacagtactcaggact
ttcagatctctgtctaccactaatgtgtttgcctgctctgatcgtcctacggtaatctac
agcagcaaccacaagctggtcttttccaatgtcaacttaaaggaggtcaactatatgtgc
cccctgaactctgagggataccctgacagcttggccttagccaataacagcaccctgaca
attggaaccatcgatgaaatacagaagctacatatccgcacagtgcccctgtatgagtct
cccagaaagatatgctatcaggaagtctctcagtgctttggggttctttccagccgtatt
gaggtgcaggatgctagtgggggtagctctcctcttagacctagtgccagcacacaggca
ctctccagcagtgttagctgcagtaaattgttctctggaagtacatccccacatgaaacg
tcttttggggaagaggttgaagttcacaatttactaatcattgatcagcacacatttgaa
gtgctgcacacacaccagttcctgcaaaatgagtatacccttagcttggtttcctgtaaa
ctagggaaggatccaaccacttactttgtggtggggactgccatggtgtatccagatgaa
gctgaaccaaagcagggaaggatcgtagttttccaatataatgatggaaagctgcaaacg
gtggcagaaaaggaggtgaaaggagctgtttattctatggtggaattcaatgggaagctg
ctagcaagtatcaacagcacggtacgactctatgagtggactgctgaaaaggaattgcga
acagagtgcaaccactacaacaatatcatggctttgtatctcaaaactaagggcgatttc
attttggtgggagacttgatgcgctcagtgctgctgttggcttataaaccgatggaagga
aactttgaggagatcgcacgagattttaatccaaactggatgagcgccgtggagatttta
gacgacgacaatttcctgggagccgagaatgcttttaatttatttgtgtgtcagaaagac
agtgctgctactactgatgaggagcggcagcatttacaggaagttggtctctttcatctg
ggcgaatttgttaacgtcttctgtcatggctccctggtgatgcagaatctgggtgagaca
tccccacctacacagggctctgtactctttggcacagtcaatggaatgattggtcttgtt
acctcgctttctgagagctggtacaatcttcttctagatgttcagaacagactcaacaaa
gtaatcaaaagcgttggcaagatcgaacactccttttggaggtcatttcacacagagaga
aagactgaaccggccacaggattcatagatggagatctgatcgagagcttccttgacatt
agtcggccaaagatgcaggaagtcattgcaaatctacagattgatgacggcagtgggatg
aaaagggagaccacggttgatgacttgataaaggtagtggaagaactgacaaggattcac
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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