KEGG   Xenopus tropicalis (tropical clawed frog): 100490039
Entry
100490039         CDS       T01011                                 
Symbol
ubr1
Name
(RefSeq) E3 ubiquitin-protein ligase UBR1 isoform X1
  KO
K10625  E3 ubiquitin-protein ligase UBR1 [EC:2.3.2.27]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xtr04121]
    100490039 (ubr1)
Enzymes [BR:xtr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     100490039 (ubr1)
Ubiquitin system [BR:xtr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   UBR box proteins
    100490039 (ubr1)
SSDB
Motif
Pfam: PRT6_C zf-UBR ClpS
Other DBs
NCBI-GeneID: 100490039
NCBI-ProteinID: XP_002941132
Xenbase: XB-GENE-6052364
UniProt: A0A7D9N0A0
Position
8:105746945..105818206
AA seq 1749 aa
MESGGGGLEQSREPGDGEMLAMRLVNALDFASAFHQHVAKHVPQIYTDELQPQVEKQEEL
AQKLILTPLEWCLFREDPNVFKEKLRHSAAPPLCGRVFRGGETTYSCRDCAIDPTCVLCM
DCFQNSIHKNHRYKMHSSMGGGFCDCGDTEAWKTGPYCKIHEPGPSDQNSDFRLKDELLA
QTKIVFPLIIRYIVDMLIWEEQKSLPAYLDTGTVEWNQYYCVLYNDEHHTYDHFIYSLQR
SLGCDQKEAQTLTSAAEREGRKAVKKGTLEQCQEVTESLKANSENVSLKPVHVEVLHGHV
MAHQSFALCLAIWLNKLLAYSSDFRQIFCQVCLEQEPKPSSFNHTCYVSLLILKDSKLHK
GVRKVLHDLIFSSFFMEMEYKKQFAIEFVKHYKQIQKEYINDDQDRNISVTAISVQVFTV
PTLARLLIEEQNVMKVITETLLEVIKEYLGSDNKFNFQGYSQERFFMVYAIILDLKYILI
SKPTSWSEKLKAKFLEGFKSFLYFLSCMQGMEGISRMVGQHVEMDSDWEAVIAMQMQLKN
VLTLIQEWCATDDDILLKSYKECHLSLLQCCTPVPSQEKKLIKMSGHSYQSYPYMVSKDP
ISIHLPLSRMLAGLHAQMCRTGVITRLCEILPPEDLQVELMIEHPLRCLVLVGQVAAEMW
RRNGLTIVSQVFYYHDVKCREEMYDKDVVMLQIGASYLDPNSFLLLLLQRYELEEAFSNV
AVPTKDMDVARQHNILIEEMLHVLICVIGERYVPGISNVTREECTMREIIHLLCIEPMAH
SAIAKALPETENTDICLDKLISKVATFKKPGVSGHGVYELKAEYLDQFNVFFYHYTKTQH
SKAEHTQKKRRKQENSSEALAPPAPPNFSPAFCNVTKLLCCDIMMHILRTILKRAAEEDP
IMWTEGMIQMVLHIIALGLLEEKQQLQRAAEEEVTFNFYHKATRVRSTDANAQSVATLLE
RLKGITQLDAQKDMIIWVRQVFETVKGLRETSSHTVPTDTVSDVAKAEEGQSPQEKEKRK
RKAEAARLHRQKIMAQMSALQKNFIETNKLLYDTTVEVQESTSPVEESLLSADEGSKVAL
GTKRGPTVPSKDVLTCILCQEEQEVKLDKPTMVLTACVQKSTTLSQTRSKVVSHTGETFD
PLFTHPEMLYGTHTGSCGHVMHVVCWQKFFEAMQKNTRQRLHVELIFDLGNGEYLCPLCK
CHCNTVIPIIPHVAQQIQSVDAEAINCVFSLPHWLDIVAARISGYNLNTIKGTKPITPEF
CKIYKDQNYEFRSILSFGVQAPPRYPTCTEGMLVHFATTVYRVGLNVPPNESDSRMPVMT
WNTCAFTIQCIESWLQDEEKPLFGSLQNRQLAGLQALVKFAEAQRVTCPQPLIRRHLIRL
LAAFLPNITLEDTPSFLSLDVFHLLVGSVLAFPSLYCEENVDLHPSTLVSTYNNLYLFHL
LTMTHILQIIFSLTTDNVPSTEPDDCEEARTAATLCQDISQLTSNSLKIDFPGWYVWKCV
KEGIMPYLRCAALFFHYLLGVMPPEELKSSGTTDNQLSALCSFLCLPTNILLLFQENWDI
VKLLIQRLSSDQSLQSVLAGYTTALRYPRKRNTLIELPEDYSSLLNQASQFRCPKFQDAE
RKHPVMCLLCGAILCSQNTCCQEVVNGEELGACTAHAMHCGAGVCIFLSIRECKVVLMEG
KTRGCIYQAPYLDEYGETDPGLKRGNPLHLSHERYRKLHQLWQQHCIIEEIGHNLEINQM
FFDFNWSLL
NT seq 5250 nt   +upstreamnt  +downstreamnt
atggagtctggaggtggaggattggagcaaagcagggagccaggggatggagaaatgctt
gccatgagattagtcaacgctttggattttgcctctgcctttcaccaacacgtggcaaag
catgtcccccagatttatacagatgagctgcagccacaagtggagaagcaagaggagctg
gcacagaaacttattttaaccccactggagtggtgcctctttagagaagatccaaatgta
ttcaaggagaagttacggcacagtgcagctcctccattatgtggaagagtctttagagga
ggggagacaacctattcctgcagggattgtgccattgatccaacctgtgtcctgtgtatg
gattgtttccagaacagcattcataaaaatcacagatacaagatgcactcttcaatggga
gggggattttgtgactgtggggatactgaagcctggaaaaccggcccatattgtaagatc
catgaaccagggccatcagatcagaattcagactttcgtttgaaggatgaacttctggcc
caaaccaaaatagtattccctttgattatccggtatatagtagacatgttaatctgggaa
gaacaaaagagtttgccagcatatctggatacagggacagtggagtggaaccagtactac
tgtgtactttacaatgatgaacaccacacctatgatcacttcatctacagtttgcagaga
tcgcttggttgtgatcagaaagaagcacagacattaaccagtgcagctgagagagagggc
cgcaaagctgttaaaaagggtactttagagcaatgccaggaggtgacagaaagtctaaag
gctaattcagagaacgtgtcgctgaaacctgtccacgtggaggtgctgcatggtcatgta
atggcccatcaaagctttgcactgtgtttagcaatctggcttaacaaactcctggcctac
tctagtgacttccgacagatcttctgtcaagtgtgcctagagcaagagccaaagcctagc
agttttaatcacacttgttatgtcagcttgttaattttaaaggactccaagcttcataaa
ggagtgcggaaagttctgcatgatctgatcttcagcagctttttcatggaaatggagtat
aagaaacaatttgctatagagtttgttaagcattacaagcagatacagaaagaatacata
aacgacgatcaggacaggaacatttcagttactgcaatatcagttcaggttttcactgtc
cctactttggctcgcctactgatagaagaacaaaatgtaatgaaagtcatcacagagact
ttactcgaggtcataaaagaatatcttggctcagacaacaagttcaacttccagggctac
agccaggaacgctttttcatggtatatgccataatccttgacctcaagtatatccttatc
tctaaacctacatcctggtctgagaagttaaaagccaagtttctggaaggatttaaatct
ttcctctattttttatcctgtatgcagggcatggaagggataagcaggatggtgggacag
cacgttgagatggattcagactgggaagctgtaatagctatgcagatgcaactgaaaaat
gtcttgacgctgatacaggaatggtgtgcaacagatgatgatatattgctcaaatcctac
aaggaatgccatctgagtcttctgcagtgttgcaccccggtcccttcccaagaaaagaag
ctgataaaaatgagtggccattcataccaaagctatccatacatggtgtccaaagaccca
atcagcatacacttacctctctctcggatgcttgctggtctacatgcacagatgtgtagg
actggtgtcatcacaagactgtgtgaaattcttcctccggaagacttacaggtggaacta
atgattgaacaccccttaagatgcctggtgctggtgggacaggtagcagctgagatgtgg
agaaggaatggccttactattgttagtcaggttttttactatcatgatgtgaagtgcagg
gaggagatgtatgacaaagatgttgtgatgctacagattggtgcatcctacctggatccc
aacagcttcctactgctcttgctgcagaggtatgaactggaggaggcattctctaatgta
gctgtgcccaccaaagacatggatgtagcaaggcaacacaacatcttaattgaagaaatg
ttacatgtccttatttgtgttattggtgagcgctatgtgccaggcattagcaatgttact
agagaagagtgcactatgagggagatcatccatctgctttgtattgaacctatggctcac
agtgcaatcgccaaggctttgccagagactgaaaacactgacatatgcctggataaactc
atcagtaaagttgccacttttaaaaaaccgggagtatcaggacatggcgtttatgaacta
aaggctgaatacctcgatcaatttaatgtgttcttttatcattacaccaaaacacaacac
agcaaggcagaacacacacagaagaaaaggcgaaaacaagaaaacagctcagaagcatta
gcccctcctgcaccccccaatttcagcccagctttttgcaacgtgaccaagcttctgtgc
tgtgatattatgatgcatattctacgaaccatcttgaagagagcagcagaggaagatcca
attatgtggacagaaggcatgatacaaatggtcctccatattatagccctggggttgtta
gaagagaagcaacagctacagagggctgctgaagaagaagtaacatttaacttctatcat
aaggcaacaagggttaggagtacagatgcaaatgcacaaagtgttgcgacactgctggag
aggctgaagggcattacccagctggatgcccagaaagacatgatcatttgggtgcgacaa
gtttttgaaaccgtaaaagggctgagagagacatctagtcacacagttcccacagataca
gtttctgacgttgcaaaagctgaagagggacaaagcccccaggaaaaggagaagcgcaaa
agaaaagctgaggcggcccggctccaccgccagaagatcatggcacagatgtcagcttta
caaaaaaatttcattgaaacaaataagcttctgtatgacaccactgtggaagtacaagaa
agcactagtcctgtagaagagagcctgttatcagcagatgaaggatcgaaggttgccttg
gggacaaaacgtggccccacagtgcctagcaaagatgttctaacatgtattctatgtcaa
gaagaacaggaagtgaaattggacaagcctacaatggtgctaactgcctgcgtccaaaag
tccacaacactgtcccaaactcgtagcaaagtggtctcacacacaggagaaacgtttgat
ccactttttacacacccagagatgttgtatggaacccatacaggcagctgtggccatgta
atgcatgttgtgtgctggcagaagttctttgaggcaatgcagaagaatacacggcagcgt
cttcacgtggagctaatttttgatcttggaaatggcgaatatctttgtccgctatgcaaa
tgccactgtaacaccgttatacctataatccctcatgttgcccagcaaatacaaagtgtg
gatgctgaagccataaattgtgttttctcacttcctcattggttggacatagtggcggcc
agaatatctggttataatttaaacaccatcaaaggaacaaagccaatcactcctgaattc
tgtaaaatttataaagaccagaattatgagttccgttccatcttgagctttggcgtgcag
gctccgccccgctatccaacttgcacagaaggaatgcttgttcactttgccactacagtg
taccgcgtgggcttaaatgttcctcccaatgagtctgattcacgtatgcctgtcatgaca
tggaatacttgtgcatttacaatccagtgtatagaaagctggcttcaggatgaagaaaaa
cccttgtttggatccctgcaaaaccggcaacttgctggattacaagccttggtgaaattt
gctgaggcccaaagagttacatgccctcagcctttgatacggagacatcttatccggtta
ttagcagcattcctgccaaacattacccttgaagacaccccatcctttctgtctttggat
gttttccatctgctggtggggtcagtgttggcattcccatcattatattgtgaagaaaat
gtagacttacatccttctacccttgtttctacctacaacaacctctacctctttcacctg
ctcacaatgacgcacatactgcaaatcattttctctttaactacagataatgtgccttct
acagaacctgacgactgtgaagaagcccgtacagctgctactctttgtcaggacatttca
caactcaccagcaacagtttaaagattgattttccggggtggtatgtttggaaatgtgtg
aaagagggcatcatgccatatctgcgatgtgcagctttgttcttccattatttgctggga
gtaatgcctccagaggagctaaaatcatcaggcactacagacaatcagttatcagctctt
tgcagcttcctctgcttgccaaccaacattcttcttcttttccaagagaactgggacatt
gtgaaacttctcattcagaggttgagttctgaccaatccctgcagagtgtcctggctggt
tacactactgcactcaggtatccaaggaaacgcaatacactaatagagcttccagaagat
tacagttcccttctcaaccaagcatcccagtttagatgtcctaagtttcaagatgctgaa
cggaaacacccggtgatgtgccttctctgtggggccattctctgttctcagaatacatgc
tgtcaggaggtggtaaatggagaagagctgggagcttgtacagcacatgccatgcactgt
ggagctggtgtctgcatcttcctaagtatcagagaatgcaaagtggtcctaatggagggt
aaaaccagaggatgtatctaccaggctccctatcttgatgaatatggagaaacagaccca
ggactgaaacgtggaaaccccttacacctttcccatgagcgatatcggaaattgcatcag
ttgtggcagcagcactgtattattgaagagattggacacaaccttgaaatcaaccagatg
ttttttgactttaattggagcctgctttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (20)   

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