KEGG   Xenopus tropicalis (tropical clawed frog): 100492212
Entry
100492212         CDS       T01011                                 
Symbol
nhlrc1
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1
  KO
K10602  E3 ubiquitin-protein ligase NHLRC1 [EC:2.3.2.27]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    100492212 (nhlrc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xtr04121]
    100492212 (nhlrc1)
Enzymes [BR:xtr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     100492212 (nhlrc1)
Ubiquitin system [BR:xtr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    100492212 (nhlrc1)
SSDB
Motif
Pfam: NHL zf-RING_2 zf-RING_5 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4 Baculo_IE-1 zf-C3HC4_2 Phytochelatin HNHc_6 SdiA-regulated Methyltransf_2 zf-C3HC4_4
Other DBs
NCBI-GeneID: 100492212
NCBI-ProteinID: XP_002932735
Xenbase: XB-GENE-1010800
UniProt: F6VLT2
Position
6:92717804..92719659
AA seq 398 aa
MSSPASKEIRNMKDFLEETELNLLECKVCFEKYSQQQKHRPKNLPCGHVICQECVLALCP
QGSSRLECPFCRKACRTLETSICLPVLHLMEMVTRVLPDQLESPSAQNTSHVTKLRPASF
NLSLSFGGWGILFNPTGIALCRKTGCLVVAHDGKKRIGVFSMTGKCIQQIGVKSDSPNAI
VYPLDVAVTQDTCIAVTDAGDHSLKVFDWSGKLTLTVKQNFLLPWGLCINLQNEVIVSDS
DAGTLVLVVADFKQGIVKKMLKLYSNLTQPREIAVCPTSGAVVVVEHLAKDRKNSSSTRV
KIFSSAMKLIRQIDSFGLSLFLPLAVHTSGVAFDHEGNVLVADVNNRCVICLDKTDECRF
LKHVVASGLSYPVALTTLEDGSVAVLDSGNHSVLVYSP
NT seq 1197 nt   +upstreamnt  +downstreamnt
atgtcatccccggcttctaaggaaatcagaaacatgaaagattttttggaagaaacagaa
ttgaatttacttgaatgcaaggtttgttttgaaaagtacagccagcagcagaaacacagg
cctaaaaaccttccatgtggccatgtgatttgccaggaatgtgttttagctctctgccct
caaggaagctcaagattagaatgcccattctgtcgtaaagcctgcagaactttggagaca
agtatctgcctacctgtcctgcacttaatggaaatggtaactcgggtacttcctgatcag
ctggaatctccatcagcacaaaatacaagtcatgtaaccaagctgaggcctgctagtttt
aatctcagtctatcatttggtggctggggcatcttgttcaacccaactggcatagcactg
tgcaggaagactggttgtctagttgtagcccatgatggcaaaaaaagaattggagtgttc
tctatgacgggaaaatgcattcaacagattggtgtcaaatcagactcccctaacgcaatt
gtttatccattggatgtcgctgtcacgcaagacacctgtatagctgtgacagatgctggt
gatcattcactgaaggtgtttgattggtcagggaagcttacgctaactgtcaaacagaac
tttttgctgccatggggcttgtgcatcaaccttcaaaatgaagttatagtttccgactct
gatgccggtactcttgttcttgttgttgcagactttaaacaaggtatagttaagaaaatg
ctcaagctctattccaacttaacccagccaagagaaattgcggtgtgcccgaccagcgga
gctgtggttgtggttgaacatctggcaaaagaccgcaagaattccagcagcacccgagta
aagattttcagcagtgctatgaaactcatacggcaaattgatagttttggcttgagtttg
tttctccctttagcggtgcacaccagcggagtcgcatttgatcacgagggcaatgtcttg
gttgctgatgtaaataacagatgtgtcatttgtttggataaaacagacgaatgccggttt
ctaaaacatgttgttgctagcggactttcttatccagtggcgctgacaacgctagaggat
ggctccgttgctgtgctagacagtggaaaccattctgtgttagtctatagcccttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (27)   

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