KEGG T01011: 394574

Xenopus tropicalis (western clawed frog): 394574

Entry

394574 CDS T01011

Gene name

srp54

Definition

signal recognition particle 54kDa

Orthology

K03106

signal recognition particle subunit SRP54

Organism

xtr Xenopus tropicalis (western clawed frog)

Pathway

xtr03060

Protein export

Class

Genetic Information Processing; Folding, sorting and degradation; Protein export [PATH:xtr03060]

SSDB

Motif

Pfam:

SRP54 SRP_SPB SRP54_N cobW CbiA AAA_33 MobB DUF2209 AAA_31 AAA_17 SRPRB AAA_10 APS_kinase AAA_22 AAA_16 Zeta_toxin ArgK AAA_18 AAA_19 6PF2K Torsin AAA_30 Thymidylate_kin ATP_bind_1 ResIII AAA_28 KTI12 VirE AAA

Other DBs

NCBI-GI:

NCBI-GeneID:

Xenbase:

UniProt:

Position

AA seq 504 aa
MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCKALLEADVNIKLVKQLRENVKSAI
DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKPNVIMFVGLQGSGKTTTCTK
LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVNIAYEGVEKFK
NENFEIVIVDTSGRHKQEDSLFEEMLQVSNAVQPDNIVYVMDASIGQACEAQAKAFKDKV
DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI
EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGQDFM
SKGNEQESMARLKKLMTIMDSMNDQELDNTDGAKLFSKQPGRVQRVARGSGVSTRDVQEL
LAQYTKFAQMVKKMGGIKGLFKGGDMSKNVNPSQMAKLNQQMAKMMDPRVLQHMGGMAGL
QSMMRQFQQGAAGNMKGMMGFNNM

NT seq 1515 nt +upstreamnt +downstreamnt
atggtgttggcagacctaggacggaagattacttcagcactgcgctcactgagcaatgca
acaatcatcaatgaagaggtgctcaatgctatgctcaaggaagtatgcaaggctttactg
gaagctgatgtgaacataaagcttgtaaagcagctgagggaaaatgtcaagtctgctatt
gatctggaggaaatggcatctggcttgaataagaggaaaatgatccagcatgctgtcttc
aaagagctcgtcaagctggtggatccaggggttaaagcatggacaccaactaaaggaaaa
cctaatgtcataatgtttgtgggtttgcaaggaagtggaaaaaccaccacttgtacaaag
ttggcatattattatcaaaggaaaggatggaaaacctgtttgatatgtgctgacactttc
agagctggagcttttgaccagttaaaacagaatgccacaaaagccagaatacctttctat
ggcagttatacagaaatggatccagtgaacattgcatatgaaggggtggagaaatttaaa
aatgaaaactttgagattgtcattgtggacacaagtgggcgccacaaacaagaagattcc
ttgtttgaagaaatgttgcaagtgtctaatgcagtacaaccggataatatagtctatgtt
atggatgcttctatcggacaagcttgtgaagcccaggctaaagccttcaaagataaggtg
gatgtagcatcagtcattgtaaccaagcttgatgggcatgcaaagggtggaggagcgctt
agtgcggttgctgctacaaagagtcccatcatttttattggaactggggagcatattgat
gacttcgaaccatttaaaacacaacctttcattagcaagcttcttggtatgggtgacatt
gaaggattgatagataaagtgaacgaattaaaactggatgacaatgaggccctcatagag
aaactaaagcatggccagttcactctgagagacatgtatgagcagtttcaaaacattatg
aaaatgggtccattcagccagatattggggatgattcctggctttggacaagattttatg
agcaaaggcaatgagcaggaatcaatggctcgactaaagaagctaatgaccatcatggac
agcatgaacgatcaggaattggataacacagatggtgccaaactttttagcaagcagccc
gggagggttcagagagtggcaagaggatctggagtctctactagagatgtacaagagctg
ctggcacaatatacaaaatttgctcaaatggttaaaaaaatgggaggaatcaaaggcctc
ttcaaaggtggtgatatgtcaaaaaatgtaaacccgtcacagatggccaaactgaaccag
caaatggccaaaatgatggaccccagagttttgcagcacatgggtggcatggcaggactt
cagtcaatgatgagacagttccaacaaggagctgctggcaacatgaaggggatgatggga
ttcaacaacatgtaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UniGene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (29)   
   Pfam (29)   
All databases (45)   

Download RDF

DBGET integrated database retrieval system