KEGG   Xenopus tropicalis (tropical clawed frog): 394804
Entry
394804            CDS       T01011                                 
Symbol
ddx3x
Name
(RefSeq) ATP-dependent RNA helicase DDX3X
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    394804 (ddx3x)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    394804 (ddx3x)
   03041 Spliceosome [BR:xtr03041]
    394804 (ddx3x)
   03036 Chromosome and associated proteins [BR:xtr03036]
    394804 (ddx3x)
Enzymes [BR:xtr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     394804 (ddx3x)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     394804 (ddx3x)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     394804 (ddx3x)
Spliceosome [BR:xtr03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    394804 (ddx3x)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    394804 (ddx3x)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25
Other DBs
NCBI-GeneID: 394804
NCBI-ProteinID: NP_989196
Xenbase: XB-GENE-999731
UniProt: Q6P4J3
Position
2:complement(56682594..56700561)
AA seq 699 aa
MSHVAVENVLSLDQQFAGLDLNSADAQSGGSATKGRYIPPHLRNKEASRQDANWDAGRGG
NGYVNGTNDDRDSRMNGYDRSGYGNRGSGRTDRGFYDRENSGWNSGRDKDAYSSFGSRGE
RGKPSLFNDRGGSGSRRPDDRRPDGYDGMANRGDRSGFGRFDRGNSRWSDERNDEDDWSK
PLAPNDRVEQELFSGSNTGINFEKYDDIPVEATGNNCPPHIESFQDVTMGEIIMGNIQLS
RYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLKENG
RYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCH
LLVATPGRLVDMMERGKIGLDFCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQT
MMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNAT
GKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT
AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLD
LLVEAKQEVPSWLENMAYEQHHKSSTRGRSKSRFSGGFGARDYRQSSGASSGFGGSSRGG
RSSGHGGSRGFGGGYGGFYNSDGYGGNYGGSSQVDWWGN
NT seq 2100 nt   +upstreamnt  +downstreamnt
atgagtcatgtggccgtggaaaatgtcctcagtctagaccagcagtttgctggcctagat
ttgaattcagctgatgcccaaagtggtggttctgcaacaaaaggacgttatatccctcca
catttgagaaacaaagaagcctcaaggcaagacgccaactgggacgctggccgtggcggg
aatggctacgttaatggtacaaacgatgaccgtgacagtcgcatgaatggttatgatcga
agtggctatggaaatcgtggttctggacgaactgacagaggcttttatgatagagagaat
tctgggtggaattcaggcagagacaaagatgcatatagcagttttggctcccgtggtgag
cgaggaaaaccaagcttatttaatgatagaggaggaagtggatccagaagaccggatgac
cgtcgaccagacggctatgatggaatggctaacagaggtgatagaagtggctttggtaga
tttgacagaggcaacagccgttggtcagatgaaagaaatgatgaggatgactggtcaaaa
cctttagctccaaatgaccgtgtagaacaggaacttttctctgggagcaacactggcatt
aattttgagaagtatgatgacattccagttgaagcaacaggcaacaattgccccccgcat
atagaaagttttcaagatgttactatgggtgaaattatcatgggaaacattcagctaagc
cgttacacacgaccaactccagtgcagaaacatgcaattccaattattattgagaagaga
gacttgatggcatgtgctcagacaggatctgggaaaactgcagcctttcttctacccata
ttaagtcagatctatgccgatgggcctggtgatgcaatgaagcacttaaaggaaaatgga
agatatggtagacgcaaacagtttccactttctcttgttttggcacctaccagagagcta
gcagtacaaatctatgaagaggctagaaagtttgcatacaggtctagagttcgcccatgt
gtagtctatggtggggctgatattggccagcagatacgagatctggaacgtggttgtcat
ctacttgttgctactcctgggcgccttgttgatatgatggaaaggggaaagattggcttg
gacttttgcaattatctagtactagatgaagcagacagaatgcttgacatgggttttgag
cctcaaattcgtcgtattgtcgaacaagacactatgccaccaaaaggtgtaaggcagact
atgatgtttagcgccactttccccaaagagattcagatacttgctcgggattttttggat
gaatatatcttcttggcagttggtagagttggttccacttcagaaaatataactcaaaaa
gttgtttgggtcgaggagatggacaaacgttcatttttgcttgacctcctcaatgcaaca
ggaaaagattccttaactctagtctttgtggagaccaaaaagggtgcagatgcacttgaa
gatttcttgtatcatgagggttatgcctgtacaagcatccatggagacaggtctcagaga
gacagagaagaagcacttcaccagttccggtcaggaaaaagcccaatccttgttgccact
gctgtagcagctagaggtcttgacatttcaaatgtaaagcatgtcataaactttgatcta
ccaagtgacattgaagaatatgtgcatcgtattggtcgtactggacgtgtagggaatctt
ggtcttgcaacatcttttttcaatgaaaagaacataaacataacaaaagatttgctggat
ctgctggtggaagccaaacaggaggttccttcttggttggagaacatggcttatgaacag
catcacaagagtagcactcgtggtcgttcaaagagtcgcttcagtggtggatttggtgct
agagactatcgtcaaagtagcggtgcaagtagcggctttggcggcagcagccgcggcggc
cgaagcagtggtcatggaggcagccgggggtttggaggcggctatggtggcttctataac
agtgacgggtatggaggcaactacgggggcagctcccaggttgactggtggggcaactaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

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