KEGG   Xenopus tropicalis (tropical clawed frog): 448007
Entry
448007            CDS       T01011                                 
Symbol
rab1a
Name
(RefSeq) ras-related protein Rab-1A
  KO
K07874  Ras-related protein Rab-1A
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    448007 (rab1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xtr04131]
    448007 (rab1a)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xtr04147]
    448007 (rab1a)
   04031 GTP-binding proteins [BR:xtr04031]
    448007 (rab1a)
Membrane trafficking [BR:xtr04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Rab GTPases
    448007 (rab1a)
 Autophagy
  Other autophagy associated proteins
    448007 (rab1a)
Exosome [BR:xtr04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   448007 (rab1a)
  Exosomal proteins of other body fluids (saliva and urine)
   448007 (rab1a)
  Exosomal proteins of colorectal cancer cells
   448007 (rab1a)
GTP-binding proteins [BR:xtr04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab1/35 [OT]
    448007 (rab1a)
SSDB
Motif
Pfam: Ras Roc Arf GTP_EFTU RsgA_GTPase MMR_HSR1 Gtr1_RagA SRPRB FeoB_N AAA ABC_tran AAA_7 PduV-EutP DUF3873 AAA_29 AAA_16 Septin AAA_22 LANC_like AAA_5 TniB CRAL_TRIO_2
Other DBs
NCBI-GeneID: 448007
NCBI-ProteinID: NP_001004787
Xenbase: XB-GENE-485527
UniProt: Q6GLH0
Position
5:32031993..32055003
AA seq 204 aa
MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI
KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL
LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGA
TAGGQEKNVKIQSTPVKQSSGGCC
NT seq 615 nt   +upstreamnt  +downstreamnt
atgtccagcatgaatcccgagtatgactatttattcaaattgctcttgattggagactcc
ggtgtgggaaagtcttgtcttctgcttaggtttgcagatgacacatacacagaaagttac
atcagtacaattggtgttgattttaaaatcaggactatagagttagatgggaaaacaatc
aaacttcaaatttgggatactgccggccaggaaagatttcgaactattacatcaagttac
tacaggggagcccatggcatcattgttgtgtatgacgtaacagaccaggaatcctttaac
aatgtaaagcagtggcttcaggaaatagatcgctatgccagtgaaaatgttaacaagtta
ttggtaggcaacaaatgtgatctaacaacaaagaaagtcgtggactacacaacagcaaag
gagtttgcagactctctgggaattccatttttggaaacaagtgcaaagaacgcgacaaat
gtagagcaggcctttatgacaatggcagcggagatcaaaaagcgaatgggtcctggcgcc
acagcaggcggtcaagagaagaatgtcaaaatccagagcactccagtcaagcagtctagt
ggaggatgctgctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (22)   
   Pfam (22)   
All databases (40)   

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